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2022-07-27herwig3, thepeg: correct lhapdfsets dependency, specify boost libs (#31744)Valentin Volkl2-13/+3
* herwig3: change lhapdfsets dependency type to build These data sets are needed for a check during build, but due to the difficulty of versioning the datasets it is preferred not to keep the them in the run environment. * herwig3: explicitly state needed boost libs * thepeg: explicitly state needed boost libs * style * stylestyle
2022-07-27py-scipy: -fPIC appending trouble with gcc@10: (#31698)Pitamila1-0/+2
`-fPIC` mandatory option squeezed by error, the NPY_DISTUTILS_APPEND_FLAGS appears handy Co-authored-by: duperrayp <duperrayp@u-un00s16835>
2022-07-27Tau must get GCC path from environment on Cray (#31751)wspear1-0/+6
* Tau must get GCC path from environment on Cray self.compiler doesn't provide the path to the gcc compiler when using cray cc and the spack internal compiler overrides the location in PATH. If possible get the location from the GCC_PATH variable instead. * Fix flake8 issues * Update package.py
2022-07-27Update omnitrace package with v1.3.0 (#31754)Jonathan R. Madsen1-5/+9
2022-07-27py-sphinx: add v5.1.1 (#31756)Adam J. Stewart1-0/+1
2022-07-27tixi: new versions (#31761)Melven Roehrig-Zoellner1-0/+3
2022-07-27valgrind: new version (#31762)Melven Roehrig-Zoellner1-0/+1
2022-07-27itensor: new version, restrict hdf5 to :1.10 (#31764)Melven Roehrig-Zoellner1-1/+2
2022-07-26curl: 7.84.0 (#31725)Harmen Stoppels1-0/+1
2022-07-26cabana: add cajita variant (#31753)eugeneswalker1-0/+5
* cabana: add cajita variant * Update var/spack/repos/builtin/packages/cabana/package.py Co-authored-by: Sam Reeve <6740307+streeve@users.noreply.github.com> * cabana: cannot build +cajita ~mpi Co-authored-by: Sam Reeve <6740307+streeve@users.noreply.github.com>
2022-07-26e4s ci stack: add spec: hdf5-vol-async (#31747)eugeneswalker2-0/+3
* e4s ci stack: add spec: hdf5-vol-async * hdf5-vol-async: add e4s tag
2022-07-26mpich@4.0.2 %oneapi: patch config.rpath (#31740)eugeneswalker2-0/+33
2022-07-26openmpi: +pmi implies schedulers=slurm (#31722)Harmen Stoppels1-2/+2
2022-07-26libjwt: new versions, missing dep, disable examples (#31723)Harmen Stoppels1-0/+6
2022-07-26jansson: new version, disable docs (#31724)Harmen Stoppels1-4/+6
We don't have the build deps for the docs, so disable for now.
2022-07-26json-c: 0.16 (#31726)Harmen Stoppels1-0/+1
2022-07-26munge: 0.5.15 (#31727)Harmen Stoppels1-0/+1
2022-07-26libgcrypt: bump (#31728)Harmen Stoppels1-0/+2
2022-07-26libgpg-error: bump (#31729)Harmen Stoppels1-0/+2
2022-07-26gnupg: bump and deprecate over cve (#31730)Harmen Stoppels1-18/+20
2022-07-26environment.py: reduce # of locks further (#31643)Harmen Stoppels2-27/+49
* environment.py: reduce # of locks further
2022-07-26containerize: fix concretization -> concretizer (#31594)Harmen Stoppels3-8/+8
* containerize: fix concretization -> concretizer * fix test
2022-07-26cmake: missing patch releases (#31676)Harmen Stoppels1-0/+2
2022-07-26llvm: Variant and dependency cleanup (#31331)Chuck Atkins9-268/+304
* llvm: Use variant when clauses for many of the expressed conflicts * llvm: Remove the shared variant as it wasn't really used * llvm: Remove unnecessary deps and make explicit the ones that are * llvm: Cleanup patch conditions * pocl: Update for llvm cleanup * unit-test: update unparse package hash with the updated llvm package * llvm: Fix ppc long double patching and add clarifying comments
2022-07-26Fix `self.extension` for symlinks (#31743)Stephen Sachs1-1/+3
`self.archive_file` is (among others) a symlink to a tarball. `extension()` on a symlink will result in no extension. This patch fixes the behavior introduced in https://github.com/spack/spack/pull/31618. Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-07-25openblas %oneapi: patch f_check for proper linkage (#31737)eugeneswalker2-0/+34
2022-07-25new package: singularity-eos (#31500)Richard Berger1-0/+181
2022-07-25gdal: fixing typo for libxml2 (#31734)snehring1-1/+1
2022-07-25GCC: Add bootstrap conflict for M1 (#31189)psakievich1-0/+1
2022-07-25LLVM requires swig version > 3 (#31625)Paul Ferrell1-1/+4
2022-07-25llvm: Add missing include for version range 8 to 11 (#31639)haralmha1-0/+5
2022-07-25Fix stage with uri params (#31618)Harmen Stoppels2-3/+3
* don't determine extension of a url * parse url to drop query params from filename
2022-07-25wget: replacing prior workaround with proper fix (#31699)snehring2-9/+42
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-07-25py-torchdata: add new package (#31704)Adam J. Stewart3-4/+74
* py-torchdata: add new package * third_party deps only in 0.4+
2022-07-25py-torchmetrics: add v0.9.3 (#31707)Adam J. Stewart1-0/+1
2022-07-25py-geopandas: add v0.11.1 (#31710)Adam J. Stewart1-0/+1
2022-07-25py-sphinx: add v5.1.0 (#31711)Adam J. Stewart1-1/+3
2022-07-24Sphinx 5.1.0 breaks doc builds (#31709)Adam J. Stewart1-1/+1
2022-07-24[py-pyprecice] add v2.4.0.0 (#31697)Ishaan Desai1-3/+5
* Add py-pyprecice v2.4.0.0 * Adding lower bound to pip dependency * Removing when=@:2.1 from dependencies packaging and pip
2022-07-24py-vermin: add latest version 1.4.1 (#31708)Morten Kristensen1-1/+2
2022-07-22clingo patch fixed in patch release (#31690)Harmen Stoppels1-1/+1
2022-07-22llvm: fix patch already applied on main branch (#31694)Harmen Stoppels1-1/+1
2022-07-22coreutils: gnulib patch (#31693)Harmen Stoppels2-0/+42
Co-authored-by: snehring <snehring@iastate.edu>
2022-07-22Mark external as explicit only when installing explicitly (#31665)Harmen Stoppels2-5/+18
2022-07-22gromacs: Added version 2021.6 (#31692)Hector Martinez-Seara1-0/+1
2022-07-22autotools: add -I flag when non-standard libtool (#31677)Harmen Stoppels2-6/+99
When 1. Spack installs libtool, 2. system libtool is installed too, and 3. system automake is used Spack passes system automake's `-I <prefix>` flag to itself, even though it's a default search path. This takes precedence over spack's libtool prefix dir. This causes the wrong `libtool.m4` file to be used (since system libtool is in the same prefix as system automake). And that leads to error messages about incompatible libtool, something something LT_INIT.
2022-07-22Use pkg_cls in spack.mirror.get_all_versions (#31636)Massimiliano Culpo2-7/+22
fixes #31627 spack.mirror.get_all_versions now uses the package class instead of the package object in its implementation. Ensure spec is concrete before staging for mirrors
2022-07-22mpitrampoline: New version 4.2.0 (#31683)Erik Schnetter1-0/+1
2022-07-21py-torch: use immutable URLs for open-ce patches (#31672)Nicholas Sly1-9/+13
* Update open-ce patches for py-torch to us immutable URLs. Update magma dependency specs to be more explicit. * Address comments for PR regarding URLs and conflicting variants. Co-authored-by: Nicholas Cameron Sly <sly1@llnl.gov>
2022-07-21[py-numpy] Newer versions do not build with `icc` (#31637)Stephen Sachs1-0/+3
* [py-numpy] Newer versions do not build with `icc` Workaround until https://github.com/numpy/numpy/issues/22011 is solved. * [py-numpy] Remove whitespaces