summaryrefslogtreecommitdiff
AgeCommit message (Collapse)AuthorFilesLines
2018-09-14Updating amrvis to allow building with profiling support. (#9204)Jon Rood1-5/+28
* Updating amrvis to allow building with profiling support. * Setting MPI default to true.
2018-09-14Update py-libensemble package to v0.3.0 (#9210)Stephen Hudson1-1/+2
2018-09-14add eigen@3.3.5 (#9212)Stephen McDowell1-0/+1
2018-09-14hypre: patch +shared@2.13.0: on darwin (#9220)Geoffrey Oxberry3-1/+1143
2018-09-14plumed: updating plumed to latest version (#9227)snehring1-0/+1
2018-09-14Build Python 3.7 with external libffi. (#9245)Sergey Kosukhin4-6/+45
2018-09-14add opencv@3.4.3 (#9213)Stephen McDowell1-0/+1
2018-09-14patch flann // gcc // cmake@3.11+ (#9214)Stephen McDowell2-0/+27
See: https://github.com/mariusmuja/flann/issues/369
2018-09-14Charmpp: rename charm to charmpp according to ++ conventions (#9216)Abhinav Bhatele5-3/+3
* Charmpp: rename charm to charmpp according to ++ conventions * modify packages that depend on charmpp
2018-09-14py-spectra: new version (#9224)Levi Baber1-0/+2
2018-09-14OpenCoarrays: update v2.2.0 (#9215)Mario Melara2-1/+32
This commit adds a patch that prevents the package from hanging. The package would hang because CMakeLists would look for a system MPI. This patch changes the behavior.
2018-09-14miniamr: added v1.4.1 (#9225)Christoph Junghans1-0/+1
2018-09-14py-h5py: add version 2.8.0 (#9231)Adam J. Stewart1-9/+14
2018-09-14portcullis: new package starting at 1.1.2 (#9218)Justin Stanley1-0/+73
2018-09-14miniQMC: add newer releases and ecp-proxy-app tag (#9233)Abhinav Bhatele1-1/+3
2018-09-14ipopt: add debug variant (#9223)Geoffrey Oxberry1-0/+10
2018-09-14hypre: add debug variant (#9222)Geoffrey Oxberry1-0/+7
2018-09-14py-multiqc: needs newer py-spectra (#9226)Levi Baber1-1/+4
2018-09-14py-networkx: new version (#9241)Levi Baber1-2/+5
2018-09-14py-decorator: new version (#9240)Levi Baber1-0/+1
2018-09-14py-markdown: fix url and hashes (#9235)Levi Baber1-12/+14
2018-09-14perl-gdgraph-histogram: new package (#9250)Levi Baber1-0/+35
2018-09-14bolt: new package starting at 1.0b1 (#9253)Ken Raffenetti1-0/+50
2018-09-14metasv: add required dependencies (#9254)Justin Stanley1-0/+2
* add runtime deps * revert to strict dep versions
2018-09-14argobots: new package starting at 1.0b1 (#9238)Ken Raffenetti1-0/+41
2018-09-14rmats: new package starting at 4.0.2 (#9243)Justin Stanley1-0/+51
* new package starting at 4.0.2
2018-09-14motioncor2 - added version 1.1.0 and removed old, unlisted versions (#9229)Douglas Duckworth1-5/+9
2018-09-14gdb: add version 8.2 (#9246)Matthias Diener1-0/+1
2018-09-14gatk: new version (#9202)Justin Stanley1-3/+5
* gatk: added 4.0.8.1, fixed binary install * gatk: fix flake8 conflict * gatk: improve comments and modify install
2018-09-14mxnet: added 1.3.0 (#9236)Justin Stanley1-10/+40
* add version 1.3.0 * change build parameters, install process * mxnet will not compile against spack's nnvm and dmlc so we must use the distributions provided by the source package. * also removed 'bin' installation as mxnet is just a shared library. * improve BLAS linking * remove unnecessary args * added variant for python bindings
2018-09-14Added Kibana package, added Elasticsearch to 6.4.0 (#9239)sknigh2-0/+41
* Added kibana, updated elasticsearch * Update elastic search to 6.4
2018-09-14Hwloc add update 2.0.2 (#9244)Daniel Topa1-1/+2
Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2018-09-14py-colormath: new version, requires newer networkx (#9237)Levi Baber1-0/+2
* py-colormath: new version requires newer networkx
2018-09-14cmake: add version 3.12.2 (#9248)Matthias Diener1-0/+1
2018-09-14r-nloptr: Explicit depends_on(nlopt). Previously there was a hidden d… (#9176)Neil Flood1-0/+10
* r-nloptr: Explicit depends_on(nlopt). Previously there was a hidden dependency, masked by the package's configure script. * r-nloptr: Change spelling of variables to satisfy pyflake8 * r-nloptr: Break a long line to satisfy pyflake8 * r-nloptr: larger indent on continuation, to satisfy pyflake8 * r-nloptr: another attempt at larger indent on continuation, to satisfy pyflake8 * r-nloptr: now a smaller indent on continuation, to satisfy pyflake8 * r-nloptr: Another attempt at right amount of indent. * r-nloptr: Another attempt at right amount of indent. * Use the correct attributes for finding the nlopt includes and libs. * Lines too long, split into pieces
2018-09-13py-espresso: apply patch to v4.0.0 only (#9196)Christoph Junghans1-2/+2
2018-09-12Bug fix: module file path parsing (#9100)scheibelp2-15/+51
Improve Spack's parsing of module show to eliminate some false positives (e.g. accepting MODULEPATH when it is in fact looking for PATH). This makes the following changes: * Updates the pattern searching for several paths to avoid the case where they are prefixes of unwanted paths * Adds a warning message when an extracted path doesn't exist (which may help catch future module parsing bugs faster) * Adds a test with the content mentioned in #9083
2018-09-12AMG: update version (#9228)Abhinav Bhatele1-0/+1
2018-09-12petsc: fix compilation with intel (#9198)Ricardo Silva1-3/+8
* mpiifort doesn't automatically link all run-time libraries * scalapack was being picked up accidentaly if intel-mkl was in the spec
2018-09-11ecp-proxy-apps: update dependencies for release 1.0 and 1.1 (#9217)Abhinav Bhatele2-13/+19
2018-09-11steps: new package starting at 3.3 (#9173)Tristan Carel1-0/+80
2018-09-10Improve spec['python'].command support for bwpy (#9157)Adam J. Stewart1-24/+19
2018-09-10py-espresso: added v4.0.0 (#9192)Christoph Junghans2-0/+31
Added v4.0.0 and workaround for cmake bug
2018-09-08trilinos: disable xlf_tpetra.patch for trilinos@develop (#9193)Satish Balay1-3/+3
This patch does not apply cleanly anymore and breaks clang/Mac builds balay@asterix /home/balay/git-repo/github/trilinos (develop=) $ patch -Np1 < /home/balay/git-repo/github/spack/var/spack/repos/builtin/packages/trilinos/xlf_tpetra.patch can't find file to patch at input line 3 Perhaps you used the wrong -p or --strip option? The text leading up to this was: -------------------------- |--- a/packages/tpetra/core/src/Tpetra_Details_libGemm.cpp |+++ b/packages/tpetra/core/src/Tpetra_Details_libGemm.cpp -------------------------- File to patch:
2018-09-08assimp: fix compile issues with intel compilers on knl/linux [a depen… (#9191)Satish Balay1-1/+14
* assimp: fix compile issues with intel compilers on knl/linux [a dependency for dealii] Fixes issue #9189 * assimp: add variant 'shared' with default value 'True'
2018-09-08xsdk: disable assimp in deal.II (#9190)Denis Davydov1-1/+1
2018-09-07libMesh: New variant and updated recent versions. (#9186)Josh Deaton1-2/+12
* libmesh: Added SLEPC eigensolver variant. * libmesh: Added new versions. * Corrected flake8 errors. * Corrected SLEPc variant with proper config & conflicts.
2018-09-07Tanim (#9158)Mike Pozulp8-5/+88
* Added jdk version, added r-ks and r-multicool packages, made some r packages less conservative in their r version requirement * flake8 fixes * fix formatting in jdk version cmd * Added type=('build', 'run') to some R package dependencies, added some missing dependencies to r-ks. Thanks Adam. * fix flake8 error
2018-09-06xsdk: add dealii (#7529)Denis Davydov2-2/+5
2018-09-06Balay/xsdk trilinos develop (#9182)Satish Balay3-1/+58
* xsdk: update xsdk@develop dependency on trilinos@develop * trilinos: enable tpetra, ifpack2, zoltan2, amesos2