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2020-10-19Add new package: botan (#19362)Martin Aumüller1-0/+50
2020-10-19gdbm patch (#19380)Sajid Ali2-1/+2
* gdbm patching * compiler name fix * rename patch
2020-10-19external find for cpio (#19379)Sajid Ali1-0/+9
* external find for cpio * address reviewer comments
2020-10-19Added tau version 2.29.1 hash (#19329)wspear1-1/+2
* Added tau version 2.29.1 hash * Update var/spack/repos/builtin/packages/tau/package.py Make version name match branch name (master) Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-19Fix "buildcache update-index --keys ..." when mirror is S3 (#19141)Scott Wittenburg1-5/+14
2020-10-19add updated version of py-xopen (#19375)Glenn Johnson1-2/+5
* add updated version of py-xopen * Update dependency constraints * Further refine the python constraints Also, put them all together. * Put python constraints at top of list
2020-10-19netcdf-fortran: support for Cray compiler (#18971)Sergey Kosukhin1-0/+36
2020-10-19New package - pulseaudio (#19378)Glenn Johnson4-0/+153
This PR adds the pulseaudio package and the speexdsp package as a dependency. In addition, this PR adds a `libs` property to the libtool package.
2020-10-19New package - Gate (#19377)Glenn Johnson5-0/+556
* New package - Gate This PR adds the Gate package as well as the ITK dependency. * Fix flake 8 errors * Be more explicit with CMake options Make sure Cmake values related to variants are explicitly set to either ON/OFF. The ITK_USE_MKL flag will turn on the following: - USE_FFTWD=ON - USE_FFTWF=ON - USE_SYSTEM_FFTW=ON Since the package depends on fftw-api, those options will always be set.
2020-10-19add updated version of trimgalore (#19376)Glenn Johnson1-0/+1
2020-10-19Add updated version of fastqc (#19372)Glenn Johnson1-0/+1
2020-10-19util-linux: Add version 2.33.1 (#19370)Dr. Christian Tacke1-0/+1
2020-10-19Added thrust@1.8.3 (#19368)Robert Pavel1-0/+1
Added version 1.8.3 to thrust
2020-10-19Remove version in extends (#19366)Sebastian Schmitt5-5/+9
extends expects the package name only. Cf. #12480.
2020-10-19A collection of tensorflow fixes and updates (#19371)Andrew W Elble6-8/+93
* A collection of tensorflow fixes and updates * tensorflow 2.3.1 requires the workaround for external protobuf as well * Update tensorflow-estimator to 2.3.0 * Update tensorboard to 2.3.0 * Update tensorboard-plugin-wit to use actual releases * Patch that potentially fixes #16073 * add myself to maintainer list
2020-10-19Slate package: resolves missing header issue (#19032)G-Ragghianti1-27/+29
* Changed make command to support new slate build variable 'blas=' * Updated to use package's "make install" target * Added variant 'blas' to support switching blas provider and removed legacy 'mkl' variant. * Fixed problem caused by systems which use a non-bash /bin/sh * Removed blas= variant in preference for setting blas provider via spec syntax (e.g., ^openblas). * Fixed formating * Changed to MakefilePackage and cleaned up make argument generation * Implemented "edit" method * Removed blank line * Sqitched to using mpi compiler wrapper variables * Update var/spack/repos/builtin/packages/slate/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-19r-rgeos: fix build error (#19360)darmac1-1/+1
2020-10-19openssh: new version 8.4p1 (#19358)Amjad Kotobi1-0/+1
2020-10-19anaconda3: new versions (#19357)Amjad Kotobi1-0/+2
2020-10-19Add new package: py-mido (#19355)darmac1-0/+21
2020-10-19Add new package: py-cekit (#18813)darmac1-0/+30
* Add new package: py-cekit * refine dependencies
2020-10-19Add new package: tpm2-tss (#18824)darmac1-0/+43
* Add new package: tpm2-tss * remove patch(), there's no need to use it
2020-10-19Add new package: percona-server (#18818)darmac1-0/+29
2020-10-19py-coapthon3: added new package at v1.0.1 (#18990)darmac1-0/+21
* Add new package: py-coapthon3 * remove mistake version
2020-10-19premake-core: added new package at v5.0.0-alpha15 (#18807)darmac1-0/+27
2020-10-19wsmancli: added new package at v2.6.0 (#18906)darmac1-0/+27
2020-10-19junit4: added new package at v4.13 (#18769)darmac1-0/+19
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-18filter_compiler_wrappers: a fix for NAG (#17133)Sergey Kosukhin1-1/+7
2020-10-18Add testing option to dev-build command (#17293)elsagermann2-1/+15
* ADD: testing to dev-build command * RM: mutally exclusive group for testing in parser * FIX: test option to subparser and not testing * ADD: spack-completion.bash * RM: local devbuildcosmo cmd * FIX: bad merge --drop-in -b --before options forgotten * FIX: --test place in spack-completion.bash * FIX: typo * FIX: blank line removing * FIX: trailing white space Co-authored-by: Elsa Germann <egermann@tsa-ln002.cm.cluster>
2020-10-18butterflypack: Support fj Fortran (#17514)ketsubouchi4-0/+1137
* butterflypack: Support fj Fortran * butterflypack: split patch * butteflypack: add ieee_support_nan
2020-10-18nag: added external detection capabilities (#18153)Massimiliano Culpo1-2/+61
2020-10-18[docs] Pkg list: current version, not latest release (#18213)Wouter Deconinck1-2/+2
The package list at https://spack.readthedocs.io/en/latest/package_list.html claims "it is automatically generated based on the packages in the latest Spack release" but it is actually based on the develop branch. This leads to confusion when users find that e.g. herwigpp is included in the list, but it cannot be found when they install the latest release. That latest release has a package list at https://spack.readthedocs.io/en/stable/package_list.html which does indeed not include herwigpp. Changing the language from "the latest Spack release" to "this Spack version" might make that clearer. Maybe.
2020-10-18mpich: Add `external find` support (#18330)Robert Blake1-0/+106
* Adding external support to mpich * Removing debugging print statement.
2020-10-18remove package: libglvnd (#18363)Omar Padron1-44/+0
2020-10-18Add new package: vvtest (#18701)Miranda Mundt1-0/+29
* Adding vvtest to spack * Fixing flake8 failures * Adding suggestions * Removing unnecessary import * Incorporating suggested changes
2020-10-18Add new package: soci (#18816)darmac1-0/+17
2020-10-18AMD ROCm rccl - numa.h issue fix (#19317)arjun-raj-kuppala3-1/+36
2020-10-18Dataviz sdk update dep variants (#19327)Chuck Atkins2-31/+18
* ecp-io-sdk: Add preferred variants to all dependencies * ecp-viz-sdk: Add preferred variants to all dependencies
2020-10-18Revert "ipopt: Add condition for 'aarch64' to Ipopt/config.guess (#13499)" ↵Massimiliano Culpo2-13/+0
(#19341) This reverts commit e7f574aad5e89be222fbee0dff72f685f87f165c.
2020-10-18Add new package: e2fsprogs (#18763)darmac1-0/+22
* Add new package: e2fsprogs * refine setup_run_environment()
2020-10-18vdt: Removed the -mfpu=neon option for aarch64. (#18134)t-nojiri2-0/+13
2020-10-18coevp: use libquadmath only x86_64 and ppcle. (#18130)t-nojiri1-0/+7
2020-10-18dmtcp: Fix for aarch64 (#19246)t-nojiri2-0/+322
2020-10-18Fix for buildcache -o (#19354)Jason Miller1-1/+2
* Fix for buildcache -o The method has more positional arguments than the caller expects. * Address length issue. Fix pylint/flake errors.
2020-10-18bash: add ssh flag (#18992)Adam J. Stewart1-0/+3
* bash: add flag on macOS * Add flag unconditionally
2020-10-18py-scipy: added v1.5.3 (#19353)Adam J. Stewart1-14/+15
2020-10-17Update libensemble to v0.7.1 (#19349)Stephen Hudson1-2/+4
* Update libensemble to v0.7.1 * Update var/spack/repos/builtin/packages/py-libensemble/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-17Removing classic flang. (#19350)Nichols A. Romero4-523/+0
2020-10-17helics: Add version 2.6.1 (#19348)Ryan Mast1-0/+1
2020-10-17Spec: fix multiple generator iteration in satisfies_dependencies (#18527) ↵Omri Mor2-2/+10
(#18559)
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