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2021-04-26Dyninst: Add dependencies for v11.0.0 (#23121)Tim Haines3-2/+7
Also update the mpileaks unit test to avoid a conflict on CentOS 6 where Dyninst >=11.0.0 no longer builds due to a compiler version conflict.
2021-04-26add a package libcxxwrap-julia (#23076)Drew Whitehouse1-0/+23
2021-04-26hypre: Add a variant for unified memory support (#23258)QuellynSnead1-0/+5
Enabling unified memory requires cuda to be enabled as well.
2021-04-26ci: Remove leftover duplicate gitlab yaml (#23248)Chuck Atkins1-125/+0
2021-04-26py-scipy: add v1.6.3 (#23253)Adam J. Stewart1-0/+1
2021-04-26ci: Generalize the GitLab CI pipeline yaml (#23225)Chuck Atkins3-34/+224
* ci: Generalize the GitLab CI pipeline yaml * ci: Rename cloud_e4s_pipelines to the more general cloud_pipelines
2021-04-26r-blavaan: new package (#23232)Glenn Johnson1-0/+37
2021-04-26fasd: new package (#23238)miheer vaidya1-0/+21
2021-04-26r-brms: new package (#23233)Glenn Johnson1-0/+52
2021-04-26p4est: add v2.3.1 (#23235)kurtsansom1-0/+2
2021-04-26openmpi: add v4.1.1 (#23242)Robert Mijakovic1-1/+2
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-04-26py-hepunits: add v2.1.0 (#23244)Valentin Volkl1-0/+1
2021-04-26py-awkward: add v1.2.2, py-uproot: add v4.0.7 (#23245)Valentin Volkl2-0/+2
2021-04-25clingo: add v5.5.0, v5.4.1 (#23239)Massimiliano Culpo1-1/+10
fixes #23236 Version 5.5.0 depends on Python 3.6 or later and CFFI
2021-04-25FLEXI: Updates cmake options according to recent changes (#23042)Julius Plehn1-3/+55
* fixes cmake options * adds several optional tools * use tag & consistent names
2021-04-23argobots: changed 'no' into 'none' for variant (#23171)Matthieu Dorier1-3/+3
2021-04-23New package: r-champ (#23221)Glenn Johnson1-0/+60
2021-04-23gcc package: fix build with +nvptx (#23165)Andrew W Elble2-2/+16
backport of 383400a6078d upstream to allow for cuda@11:
2021-04-23New package: r-nonnest2 (#23222)Glenn Johnson1-0/+27
2021-04-23New package: r-shinystan (#23223)Glenn Johnson1-0/+42
2021-04-23r-renv: new package (#23067)Glenn Johnson1-0/+21
2021-04-23Bootstrap with -O3 in cmake (#23147)Harmen Stoppels1-0/+2
2021-04-23Add NCCL 2.8.4 and 2.9.6. (#23219)romerojosh1-0/+2
2021-04-23Add cuDNN 8.2.0 (#23214)romerojosh1-0/+8
2021-04-23MUMPS: allow for more optimized builds (#23161)RĂ©mi Lacroix1-0/+24
* MUMPS: Use GEMMT BLAS extension when possible. This should improve the performance and is recommanded by the developers. * MUMPS: Add a new "openmp" variant. * MUMPS: Add a "blr_mt" variant. This improves performance when using OpenMP but might not be compatible with all multithreaded BLAS.
2021-04-23tasmanian: add v7.5, improved cuda and rocm support (#23148)Miroslav Stoyanov1-2/+25
2021-04-23ROOT: fix pyroot build failure in v6.20.0 (#23038)David Hadley1-1/+1
2021-04-23openmm: add v7.5.0 (#23037)Andrew W Elble1-0/+1
2021-04-23r-rjava: set JAVAH environment variable (#23055)Glenn Johnson1-0/+5
Set the path to javah via the JAVAH environment variable. If it is a version of java that does not have javah it will fall back to `javac -h`. Without specifying this the build could pick up a javah from the system.
2021-04-23r-runjags: new package (#23058)Glenn Johnson1-0/+31
2021-04-23r-lavaan: new package (#23138)Glenn Johnson1-0/+24
2021-04-23r-colourpicker: new package (#23136)Glenn Johnson1-0/+31
2021-04-23r-isva: new package (#23137)Glenn Johnson1-0/+22
2021-04-23r-dmrcate: new package (#23151)Glenn Johnson1-0/+36
2021-04-23mpa and fgfs: add v1.1.1 (#23173)Gregory Lee2-0/+2
2021-04-23gmap-gsnap: add v2021-03-08 (#23178)snehring1-0/+1
2021-04-23augustus: add v3.4.0 and update package (#22879)Glenn Johnson2-38/+112
- add version 3.4.0 - add patch for bam2wig when version 3.4.0 - url format changed again, hopefully stable now - added missing python dependency when version >3.3.1 - have older version compile with htslib, samtools ,bcftools - new dependencies for version 3.4.0 - sqlite - mysql-client - mysqlpp - lp-solve - suite-sparse - refactored filtering code - set python interpreter in scripts
2021-04-23shadow: add v4.8.1 (#23185)Robert Mijakovic1-2/+3
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-04-23fontconfig: resolve tarball issue fcobjshash.h (#23190)Tamara Dahlgren1-0/+6
2021-04-23docs: be more precise on what `spack add ...` does (#23204)George Hartzell1-3/+3
This is as much a question as it is a minor fine-tuning of the docs. I've been known to add things to an environment by editing the `spack.yaml` file directly. When I read the previous version of this sentence, I was afraid that `spack add` was actually doing *two* things, modifying the `spack.yaml` and updating something else that defined the roots of the Environment. A bit of experimentation suggests that editing the `spack.yaml` file is sufficient to change the roots. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-04-23mpich: post-configure patch for cce (#23193)Greg Becker1-0/+11
2021-04-23pythia8: add v8304, fix copy-paste errors in configure arguments (#23028)Valentin Volkl1-2/+3
2021-04-23er: add v0.0.4 (#23022)Cameron Stanavige1-8/+13
This adds that new version to the package, updates the url, and updates the hash of v0.0.3 for the new url. This also updates the KVTree dependency as MPI is required to be enabled in KVTree for er to work. rankstr is now also required by er for recently added tests.
2021-04-23py-particle: add v0.14.1 (#23216)Valentin Volkl1-0/+1
2021-04-22Docs: Updated copyrights in files still using 2020 as ending year (#23215)Tamara Dahlgren42-42/+42
2021-04-22Initial Version of Ascent Miniapp Spackage (#23170)Robert Pavel1-0/+22
Initial version of ascent miniapp spackage
2021-04-22hpctoolkit: fix patch from #22864 (#23149)Mark W. Krentel2-6/+17
PR #22864 added a patch to hpctoolkit to fix an issue with gcc 10.x, and the patch was applied to all revs unconditionally. But this was fixed in hpctoolkit master on Aug 11, 2020, so the patch should only apply to old revs. Fixes #22951.
2021-04-22NEST package: add version @master; fix ~python (#23211)Itaru Kitayama1-2/+4
2021-04-22[AMD] - rocm-openmp-extras 4.1 updates. (#22998)estewart081-20/+53
Update package with 4.1 sha keys. Use variant to disable openmp in the build of llvm-amdgpu. Set CPATH, LIBRARY_PATH so that clang knows to look in the rocm-openmp-extras for headers/libraries. Disable flang warnings as Spack thinks they are errors. In ROCm 4.1, the plugin changed names from hsa -> amdgpu. Update HSA_INCLUDE for 4.1.0.
2021-04-22Update patchfile to allow xl+cuda builds. (#23201)Kelly (KT) Thompson1-1/+16