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2020-10-21scipoptsuite (#19430)Andrew W Elble1-0/+30
2020-10-21py-hdbscan (#19428)Andrew W Elble1-0/+31
2020-10-21glog (#19423)Andrew W Elble1-0/+1
2020-10-21gflags (#19422)Andrew W Elble1-0/+1
2020-10-21coinutils (#19421)Andrew W Elble1-0/+19
2020-10-21Update git to 2.29.0 (#19415)albestro1-0/+5
2020-10-21update version to avoid compile error (#19363)darmac1-2/+4
* update version to avoid compile error * Update var/spack/repos/builtin/packages/r-rgdal/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-21Provide doxygen@1.8.20. (#19412)Kelly (KT) Thompson1-0/+1
2020-10-21py-cvxopt: refine dependency @1.1.9 and update version to @1.2.5 (#19385)darmac1-1/+3
* refine dependency @1.1.9 and update version to @1.2.5 * refine depends_on() for python
2020-10-21Add FORM (#19397)iarspider1-0/+27
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Add FORM * Update package.py Changes from review Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21Add QD (#19402)iarspider1-0/+26
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Add QD * Update package.py Changes from review Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21Add Allinea to cray-libsci (#19232)Chris Richardson1-0/+4
2020-10-21quantum-espresso: fix build fail @6.6 and add conflicts a64fx. (#19383)Toyohisa Kameyama1-1/+9
* quantum-espresso: fix build fail @6.6 and add conflicts a64fx. * get patch to gitlab. * Add +patch
2020-10-21CMakePackage: added 'ipo' variant (#18374)Omri Mor1-1/+17
+ipo sets CMAKE_INTERPROCEDURAL_OPTIMIZATION=ON The option is not supported for CMake < 3.9
2020-10-21Make url_fetch test independent of locale settings (#19390)Massimiliano Culpo1-1/+1
2020-10-21Change 'any' to wildcard for variants (#19381)Greg Becker7-103/+49
2020-10-20Add new packages: ispc & embree (#19361)Martin Aumüller4-0/+176
* Add new package: ispc * Add new package: embree
2020-10-20Thepeg fix (#19405)iarspider1-0/+2
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * Fixes for thepeg Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-20mfem: Fix support for SUNDIALS and PETSc features (#19326)Josh Essman1-6/+13
* mfem: specify PETSC_DIR, link correct sundials libraries * fix: only use PETSC_DIR directly for static builds * fix: only use sundials nvecmpiplusx for MFEM 4.2+
2020-10-20tau unwind patch: only patch 2.29, not 2.29.1 (#19409)eugeneswalker1-1/+1
2020-10-20Lhapdf extends python (#19398)iarspider1-0/+2
* Add recipe for qgraf * Revert "Add recipe for qgraf" This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd. * LHAPDF should extend Python to get env variables correct Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-20deal.II: Add more conflicts due to symbol clashes between dependencies (#19408)Jean-Paul Pelteret1-1/+10
2020-10-20py-archspec: added new package at v0.1.1 (#19395)Massimiliano Culpo3-11/+30
2020-10-20axel: fix build error (#19387)darmac1-0/+4
2020-10-20mesa: Restrict llvm to < 11 (#19393)Chuck Atkins1-1/+1
2020-10-20refine setuptools version to avoid spec conflict (#19384)darmac1-1/+1
2020-10-20Adding AOCC compiler to SPACK community (#19345)GaneshPrasadMA11-4/+229
* Adding AOCC compiler to SPACK community The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications. * Added unit tests for detection and flags for AOCC * Addressed reviewers comments w.r.t version checks and url,checksum related line lengths Co-authored-by: Test User <spack@example.com>
2020-10-20boost: fix building old versions with non-system glib and bzip2 (#19389)ketsubouchi2-0/+35
2020-10-20krims: disable float80 when non x86_64. (#19388)Toyohisa Kameyama2-0/+19
2020-10-20MRCPP: added new versions up to v1.3.5 (#19257)Roberto Di Remigio1-5/+16
Removed all alpha versions too
2020-10-20py-pyqt4: Require older version of PySIP (#19391)Seth R. Johnson1-1/+1
Fixes #19322, thanks sto @Sinan81.
2020-10-20Fix python scripts relying on external python in env (#19241)Greg Becker1-1/+3
2020-10-19add updated version of py-dnaio (#19374)Glenn Johnson1-1/+4
* add updated version of py-dnaio * Add py-setuptools-scm build dependency * Fine tune the py-xopen dependency constraint The needed version of xopen does not become specific until v0.4 of dnaio. * Set constraint on py-setuptools-scm The py-setuptools-scm dependency is needed beginning with v0.4.
2020-10-19updated version of py-cutadapt (#19373)Glenn Johnson1-4/+14
* updated version of py-cutadapt * Update dependency specs * Add py-setuptools-scm build dependency * More constraint fixes * Fix version range for py-xopen
2020-10-19Add new package: botan (#19362)Martin Aumüller1-0/+50
2020-10-19gdbm patch (#19380)Sajid Ali2-1/+2
* gdbm patching * compiler name fix * rename patch
2020-10-19external find for cpio (#19379)Sajid Ali1-0/+9
* external find for cpio * address reviewer comments
2020-10-19Added tau version 2.29.1 hash (#19329)wspear1-1/+2
* Added tau version 2.29.1 hash * Update var/spack/repos/builtin/packages/tau/package.py Make version name match branch name (master) Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-19Fix "buildcache update-index --keys ..." when mirror is S3 (#19141)Scott Wittenburg1-5/+14
2020-10-19add updated version of py-xopen (#19375)Glenn Johnson1-2/+5
* add updated version of py-xopen * Update dependency constraints * Further refine the python constraints Also, put them all together. * Put python constraints at top of list
2020-10-19netcdf-fortran: support for Cray compiler (#18971)Sergey Kosukhin1-0/+36
2020-10-19New package - pulseaudio (#19378)Glenn Johnson4-0/+153
This PR adds the pulseaudio package and the speexdsp package as a dependency. In addition, this PR adds a `libs` property to the libtool package.
2020-10-19New package - Gate (#19377)Glenn Johnson5-0/+556
* New package - Gate This PR adds the Gate package as well as the ITK dependency. * Fix flake 8 errors * Be more explicit with CMake options Make sure Cmake values related to variants are explicitly set to either ON/OFF. The ITK_USE_MKL flag will turn on the following: - USE_FFTWD=ON - USE_FFTWF=ON - USE_SYSTEM_FFTW=ON Since the package depends on fftw-api, those options will always be set.
2020-10-19add updated version of trimgalore (#19376)Glenn Johnson1-0/+1
2020-10-19Add updated version of fastqc (#19372)Glenn Johnson1-0/+1
2020-10-19util-linux: Add version 2.33.1 (#19370)Dr. Christian Tacke1-0/+1
2020-10-19Added thrust@1.8.3 (#19368)Robert Pavel1-0/+1
Added version 1.8.3 to thrust
2020-10-19Remove version in extends (#19366)Sebastian Schmitt5-5/+9
extends expects the package name only. Cf. #12480.
2020-10-19A collection of tensorflow fixes and updates (#19371)Andrew W Elble6-8/+93
* A collection of tensorflow fixes and updates * tensorflow 2.3.1 requires the workaround for external protobuf as well * Update tensorflow-estimator to 2.3.0 * Update tensorboard to 2.3.0 * Update tensorboard-plugin-wit to use actual releases * Patch that potentially fixes #16073 * add myself to maintainer list
2020-10-19Slate package: resolves missing header issue (#19032)G-Ragghianti1-27/+29
* Changed make command to support new slate build variable 'blas=' * Updated to use package's "make install" target * Added variant 'blas' to support switching blas provider and removed legacy 'mkl' variant. * Fixed problem caused by systems which use a non-bash /bin/sh * Removed blas= variant in preference for setting blas provider via spec syntax (e.g., ^openblas). * Fixed formating * Changed to MakefilePackage and cleaned up make argument generation * Implemented "edit" method * Removed blank line * Sqitched to using mpi compiler wrapper variables * Update var/spack/repos/builtin/packages/slate/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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