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2023-06-30tests/slepc: convert to new stand-alone test process (#38653)Tamara Dahlgren1-43/+31
2023-06-30Remove deprecated versions and packages (#37895)Adam J. Stewart52-1703/+92
This PR removes deprecated versions for all packages that I'm maintaining. In future Spack releases, I'm planning to do this on a much larger scale, but we can hold off until we have better reproducibility. I'm hoping that this will improve the maintainability of these packages. If any other maintainers of these recipes would like to retain any of these deprecated versions, or add new versions, speak now or forever hold your peace 😄 --------- Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-06-30Python: add new versions (#38620)Adam J. Stewart1-2/+8
2023-06-30XZ package (Windows): install .dll files in bin (#35888)Dan Lipsa1-6/+14
Windows runtime library loading searches PATH, and therefore bin/ is the appropriate place to put .dll files. Prior to this change, XZ was installing both .dll and .lib files to the lib/ directory.
2023-06-30tests/pythons: convert to new stand-alone test process (#38340)Tamara Dahlgren1-13/+12
2023-06-29Py-shroud: add version 0.12.2 (#38643)Chris White1-1/+2
* add py-shroud version * change version number based on advice of adamjstewart
2023-06-29py-iterative-stats: Change maintainer, add new version (#38609)mschouler1-2/+3
* Change maintainer, add new version and deprecate old one * Fix style issue * Revert deprecation --------- Co-authored-by: Marc Schouler <marc.schouler@inria.fr>
2023-06-29`py-nvidia-dali`: add v1.27.0 (#38605)Thomas Bouvier1-11/+39
* `py-nvidia-dali`: add v1.27.0 * Style
2023-06-29py-scipy: add v1.11.1 (#38635)Adam J. Stewart1-0/+1
2023-06-29py-pandas: add v2.0.3 (#38636)Adam J. Stewart1-0/+1
2023-06-29numaprof: New package (version : 1.1.4) (#35271)Sébastien Valat2-0/+62
* numaprof: New package (version : 1.1.4) * numaprof: Improve the deps description by adding 'type' * numaprof: Fix maintainer semantic
2023-06-29relion: use patch from github for relion 4.0 (#38432)Annop Wongwathanarat2-27/+5
2023-06-28py-rasterio: add v1.3.8 (#38621)Adam J. Stewart1-0/+1
2023-06-28py-pykerberos: needs krb5 for build to determine link and cflags via ↵eugeneswalker1-1/+1
krb5-config binary (#38623)
2023-06-28openblas: do not build tests when installing (#38591)Seth R. Johnson1-1/+3
* openblas: do not build tests when installing * Add note about building tests
2023-06-28pruners-ninja: patch in upstream fix for spack issue #32112 (#38613)eugeneswalker2-0/+26
2023-06-28[intel-tbb] support for building 2020.3 with icx (for dyninst) (#38610)Robert Cohn2-0/+24
2023-06-28celeritas: add patch when using geant4@10 (#38592)Seth R. Johnson1-0/+6
2023-06-27environment-modules: add version 5.3.1 (#38597)Xavier Delaruelle1-1/+2
2023-06-27geos: add v3.12.0 (#38595)Adam J. Stewart1-0/+1
2023-06-27mindthegap: adding new version 2.3.0 (#38596)snehring1-0/+6
2023-06-27intel-oneapi-mkl: handle external mkl with external mpi (#38263)Robert Cohn1-1/+4
2023-06-27py-ruamel-yaml: add 0.17.32 and py-ruamel-yaml-clib: add 0.2.7 (#38585)Manuela Kuhn2-5/+14
* py-ruamel-yaml: add 0.17.32 and py-ruamel-yaml-clib: add 0.2.7 * Update var/spack/repos/builtin/packages/py-ruamel-yaml/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fix style * Fix python dependency --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-06-27py-lightly: add v1.4.10 (#38594)Adam J. Stewart1-0/+1
2023-06-27HDF5: is_enabled helper (ON) (#35705)Axel Huebl1-3/+1
* HDF5: is_enabled helper (ON) Slightly generalize the `is_enabled` helper in the HDF5 package. `ON` is the most typical CMake bool option passed, besides many other possible `true` values, and should be included as a possible check to the config. * Simplify --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-06-27py-reportlab: add 4.0.4 (#38561)Manuela Kuhn1-0/+3
2023-06-27py-setupmeta: add 3.4.0 (#38589)Manuela Kuhn1-1/+1
2023-06-27py-rst2pdf: add 0.100 (#38581)Manuela Kuhn1-1/+4
2023-06-27py-rich: add 13.4.2, py-markdown-it-py: add 3.0.0, py-mdurl: new (#38573)Manuela Kuhn3-13/+44
* py-rich: add 13.4.2, py-markdown-it-py: add 3.0.0, py-mdurl: add new package * Fix style
2023-06-27py-rfc3986: add 2.0.0 (#38570)Manuela Kuhn1-3/+4
2023-06-27kokkos-kernels: require kokkos+cuda_lambda (#38568)brian-kelley1-0/+3
(when +cuda, and on version 4.0.00 and up)
2023-06-27py-lightning: add v2.0.4, drop +extra (#38531)Adam J. Stewart4-64/+15
* py-lightning: add v2.0.4, drop +extra * Update dependencies
2023-06-27Kokkos Kernels: adding release 3.7.1 and 4.0.0 (#36655)Luc Berger1-1/+5
Co-authored-by: eugeneswalker <38933153+eugeneswalker@users.noreply.github.com>
2023-06-27superlu-dist: convert to new stand-alone test process (#38188)Tamara Dahlgren1-18/+9
2023-06-27Update superlu home page (#38562)wspear1-1/+1
2023-06-27tests/py-genshi: convert to new stand-alone test process (#38345)Tamara Dahlgren1-7/+2
* py-genshi: convert to new stand-alone test process * py-genshi: add run as py-setuptools deptype; remove test_testsuite comment
2023-06-27fairmq: add v1.7.0 (#38550)Dennis Klein1-1/+12
2023-06-27cargs: add new package (#38548)Matthieu Dorier1-0/+20
2023-06-27py-bx-python: add 0.9.0 (#38419)George Young1-2/+5
* py-bx-python: add 0.9.0 * remove dependency * Remove python upper bound * Clarify dependency requirements --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-06-26CachedCMakePackage: set build type (#38502)Brian Van Essen1-8/+0
Fixed the cached CMake package so that the build_type field is saved in the cached configuration file.
2023-06-26py-numpy: add v1.24.4 (#38555)Adam J. Stewart1-0/+1
2023-06-26krb5: add missing findutils dependency (#38440)Manuela Kuhn1-0/+1
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-06-26Adds new Qthreads package version (#38421)Carson Woods1-2/+16
* Add new versions of Qthreads * Add version URLs explicitly as it has recently changed * Use function to extrapolate version URL for older versions * Fix url formatter
2023-06-26Openfoam: replace two boolean variants with multi-valued variant for ↵kjrstory1-6/+11
precision option (#37736)
2023-06-26llvm: fix build against libstdc++ 13 (#38329)Martin Aumüller1-0/+7
llvm @13-15 is required for ispc, but fails to build with GCC 13. 14.0.6 and 15.0.7 built successfully with upstream patch, 13.0.1 still fails. Thus upstream patch is applied to 14 and 15 only.
2023-06-26ufs-utils: update urls, versions, and dependencies (#37255)Alex Richert1-4/+9
2023-06-26tests/heffte/tasmanian: convert to new stand-alone test process (#35750)Tamara Dahlgren2-119/+37
2023-06-26cromwell: add v85 (#38427)George Young1-3/+8
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-06-26netcdf-c: apply patches (#38324)Sergey Kosukhin1-0/+19
* netcdf-c: fix building on macOS * netcdf-c: add patch fixing multi-threaded HDF5 calls * netcdf-c: update patch url
2023-06-26mmseqs2: patching to support building with %gcc@13: (#38296)George Young1-0/+8
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>