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* Update go to 1.7.4 and 1.6.4 to fix security issues
The go team recently rolled out two releases to address security
issues. Details available on the [go release
site](https://golang.org/doc/devel/release.html).
This commit updates our explicitly supported versions.
It also includes a comment about two CentOS requirements (enable
user_namespace and ensure that the static c library is installed) that
are required for the pacakges to pass their tests.
* Flake8 cleanup
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It looks more complicated because zlib has custom configure which does
not support CFLAGS option. So instead, we take it from environment.
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* fix download URL and dependencies for py-pypar
* use url_for_version in py-pypar
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* Modification to accept flex version >= 2.6 + bug fix on paraview dependency
* flake8 "corrections"
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specific version for default install method. (#2456)
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The option appeared in CMake 3.2 (specifically, in 3.2.0-rc2, see
https://cmake.org/pipermail/cmake-developers/2015-February/024552.html).
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* Make X11 font install dir the font search default
We install the X11 fonts into `/share/fonts` beneath the font-util
installation prefix, but that directory is not one of the places that
the font subsystem searches.
This commit makes the fontconfig package depend on the font-util
package, and then it makes
```python
spec['font-util'].prefix + "/share/fonts"
```
be the fontconfig default font location.
Before this change, plots drawn by R have bounding boxes where font
glyphs should be. After this change fonts appear as expected.
* Enrich description string (trigger new CI run)
Improve the docstring for the package.
Also interested in the side effect of triggering another CI run
to see if the recent flake8 fix lets this PR run clean.
* Flake8 cleanups
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* add missing py-numpy dependency to scipy
* add missing setuptools build dependency to py-argcomplete
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* Updated hdf5: new versions added.
* Updated hdf5: url_for_version() accounts for per-version urls.
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intel-parallel-studio: fix location of MKL libs
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* Update R&friends to use our X11 libs
Add `depends_on()`'s for R, Cairo, and Tk so that they use the Spack X
bits.
* Conditionalize X stuff on variant
Another step towards hooking up the X stuff.
There's still discussion happening on the issue, but this is better
than the 'everything must build with X' state that it was in.
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* New package - r-irkernel
* New package - r-pbdzmq, dependency of r-irkernel
* Adding blank line expected by flake8 tests
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Fixed a bug that was causing memory errors after asserts in 'tetgen@1.5.0'.
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This corrects a severe problem (segfault) on macos Sierra.
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Funded-by: IDEAS
Project: IDEAS/xSDK
Time: .3 hours
x
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* Fix building latest version of flex
* Don't need when clause
* Remove perl deps, shebang too long
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* New package - r-rinside
* Changes to pass flake8 test
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* New package - r-rzmq
* Adding homepage
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- Added 'dap' and 'cdmremote' variants
This is based on work in #2324 with the following motivation:
Turn off DAP support by deafult. DAP requires curl, which has issues
with circular dependencies. For 95% of NetCDF users that do not need
DAP, turning it off avoides this rats nest of problems.
- Added 'parallel-netcdf' variant
To support work with parallel-netcdf
- Added 'shared' and 'static' build separation
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* Update go-bootstrap package
The last C based Go src tree was the 1.4 series. For a while they
were cutting new releases so that people could bootstrap from a C only
system. Now they're recommending that you either use the release-1.4
branch or that you use a date-stamped tarball that they'll produce on
an as-needed basis.
There are several issues that keep 1.4.2 from building on a CentOS 7
system.
I've switched to the date based tarball.
The cgo bits were also mis-behaving, but they're not needed for the
bootstrapping task so I've set an environment variable that disables
them.
Details [on the install-from-source
page](https://golang.org/doc/install/source#go14) and these issues:
- https://github.com/golang/go/issues/17545
- https://github.com/golang/go/issues/16352.
* Update go package
Switched from pulling from the git repository to using the source
tarballs and added digest values.
Added support for 1.7.3, continued supporting 1.6.2, including patches
for a couple of problems (details in
[17545](https://github.com/golang/go/issues/17545) and
[17986](https://github.com/golang/go/issues/17986).
Dropped support for 1.5.4 and 1.4.2 because they no longer pass their
tests and the patches above to not apply.
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* New package - r-formatr
* Block comment should start with '# '
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* Updating SuperLU package file with ability to build version 4.3 (before they added cmake) with external blas or internal blas, and added capability to build the latest version 5.2.1 (with cmake) with internal blas.
* Updating SuperLU package file with suggested changes, i.e. reorganizing installation methods based on version, adding cmake dependency when necessary, removing any use of internal blas, and also adding fpic variant.
* Fixing flake8 failures.
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* New package - r-catools
* Splitting lines to pass flake8 travis test
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* New package - r-partykit
* Splitting lines to pass flake8 travis test
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