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2021-10-18new package: berkeleygw (#21455)Miguel Dias Costa1-0/+220
2021-10-18cosma: add new versions and improve package (#24136)Harmen Stoppels1-30/+61
* cosma: add new versions and improve package * Move method below depends_on's
2021-10-18httpie: add v2.6.0 (#26791)Mickaël Schoentgen2-13/+18
Signed-off-by: Mickaël Schoentgen <contact@tiger-222.fr> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-18file and python dependents: add missing dependencies (#26785)Seth R. Johnson4-3/+34
* py-magic: delete redundant package This package is actually named py-python-magic (since the project itself is "python-magic"). * New package: libmagic * Py-python-magic: add required runtime dependency on libmagic and new version * Py-filemagic: add required runtime dependency * py-magic: restore and mark as redundant This reverts commit 4cab7fb69e2c2b8098895bee92aabe5df8b7aaaa. * file: add implicit dependencies and static variant Replaces redundant libmagic that I added. Compression headers were previously being picked up from the system. * Fix py-python-magic dependency * Update python version requirements
2021-10-18tasmanian: add smoke test (#26763)Miroslav Stoyanov1-1/+9
2021-10-18Make macOS installed libraries more relocatable (#26608)Seth R. Johnson1-3/+3
* relocate: call install_name_tool less * zstd: fix race condition Multiple times on my mac, trying to install in parallel led to failures from multiple tasks trying to simultaneously create `$PREFIX/lib`. * PackageMeta: simplify callback flush * Relocate: use spack.platforms instead of platform * Relocate: code improvements * fix zstd * Automatically fix rpaths for packages on macOS * Only change library IDs when the path is already in the rpath This restores the hardcoded library path for GCC. * Delete nonexistent rpaths and add more testing * Relocate: Allow @executable_path and @loader_path
2021-10-18allow multiple values for tensile_architecture and expand the gpu list for ↵Sreenivasa Murthy Kolam1-9/+20
rocm-4.3.1 (#26745)
2021-10-18environment-modules: add version 5.0.1 (#26786)Xavier Delaruelle1-1/+2
2021-10-18Revert 19736 because conflicts are avoided by clingo by default (#26721)Harmen Stoppels1-2/+0
2021-10-17py-jupytext: add new package (#26732)Valentin Volkl3-0/+70
* py-jupytext: add new package * Apply suggestions from code review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * update jupytext dependencies * Apply suggestions from code review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * py-jupytext: remove py-jupyerlab dependency Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-17py-vermin: add latest version 1.3.0 (#26787)Morten Kristensen1-1/+2
2021-10-17py-gevent: add version 1.5 (#26731)Valentin Volkl1-4/+10
* py-gevent: add version 1.5 * py-gevent: update dependencies for v1.5.0 * Apply suggestions from code review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-gevent/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-17Add ECP tags for CoPA and related packages (#26739)Sam Reeve5-8/+12
* Add ECP tags for CoPA (and related) packages * Update CoPA maintainers
2021-10-17nlohmann-json: update to version 3.10.4 (#26779)Ryan Mast1-0/+2
2021-10-16[Fix for the GitLab CI] phist: prefer @1.9.5 (1.9.6 is not compatible w/ ↵Bernhard Kaindl1-3/+70
mpich%gcc:9) (#26773) * phist: Prefer 1.9.5 (1.9.6 uses mpi_f08, but not available in CI) * phist: remove dupe of 1.9.5, missing preferred=True Also, for 1.9.6, patch the (most, one does not work) tests to use
2021-10-15Update GASNet package.py to include version 2021.9.0 (#26736)Scot Halverson1-0/+1
2021-10-15libblastrampoline: add v3.1.0 (#26769)Mosè Giordano1-0/+1
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-10-15Fix ruby dependent extensions. (#26729)Brice Videau1-5/+9
* Fix ruby dependent extensions. * Added Kerilk as maintainer.
2021-10-15GCC: Conflict for <12 for M1 (#26318)Axel Huebl1-0/+4
aarch64/M1 is only a supported build combination for GCC in the planned GCC 12+ release.
2021-10-15py-charset-normalizer: add v2.0.7 (#26756)Mickaël Schoentgen1-0/+19
Signed-off-by: Mickaël Schoentgen <contact@tiger-222.fr>
2021-10-15py-rdflib: add 6.0.2 (#26757)Manuela Kuhn1-2/+5
2021-10-15py-ipykernel: add 6.4.1 and fix deps (#26758)Manuela Kuhn1-3/+10
2021-10-15py-setuptools: add 58.2.0 (#26759)Manuela Kuhn1-0/+1
2021-10-15py-jupyter-client: add 6.1.12 (#26760)Manuela Kuhn1-0/+4
2021-10-15libabigail: add v2.0 (#26753)Vanessasaurus2-1/+42
Signed-off-by: vsoch <vsoch@users.noreply.github.com> Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2021-10-15Disable parallel builds in groff and gosam-contrib (#26730)Joseph Wang2-1/+5
Work around to #26726 and #26714
2021-10-15HiOp: add v0.5.0 + small changes in dependencies (#26744)Cameron Rutherford1-3/+5
2021-10-15paraview: add adios2 variant (#26728)kwryankrattiger1-0/+7
2021-10-15Removing NCEP Post (ncep-post). (#26749)Timothy Brown2-399/+0
UPP and ncep-post are the same package, so this PR removes the duplication. ncep-post was originally named after the upstream repo that now changed its name to UPP.
2021-10-15vtk: modify conflict between osmesa and qt (#26752)Eric Brugger1-3/+2
2021-10-14Remove extra tag assignments (#26692)Tamara Dahlgren4-12/+4
2021-10-14py-datalad: add 0.15.2 (#26750)Manuela Kuhn1-1/+2
2021-10-14cp2k: use variant propagation trick for virtuals (#26737)Harmen Stoppels1-5/+6
2021-10-14ASP-based solver: add a rule for version uniqueness in virtual packages (#26740)Massimiliano Culpo2-0/+33
fixes #26718 A virtual package may or may not have a version, but it never has more than one. Previously we were missing a rule for that.
2021-10-14add py-pyh5md and update py-espressopp (#26746)Christoph Junghans2-0/+21
* add py-pyh5md and update py-espressopp * Update package.py
2021-10-14libfive: Add all variants, +qt needs qt@5.15.2:+opengl (#26629)Bernhard Kaindl1-3/+22
Refresh of deps to fix the build and add variants from CMakeLists.txt
2021-10-14sombrero: add version 2021-08-16 (#26741)Mosè Giordano1-0/+2
2021-10-14vc: Enable the testsuite, excluding tests failing on Zen2 (#26699)Bernhard Kaindl2-0/+35
This fixes running the testsuite, it adds the package virtest for it.
2021-10-14switch to the smoke testing included in heffte (#26720)Miroslav Stoyanov1-54/+9
2021-10-14alpgen: new package (#26713)iarspider7-0/+6922
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2021-10-14edm4hep: new version, fix tests (depends on catch2) (#26679)Thomas Madlener2-0/+16
2021-10-14podio: new version and fix python unittest env (#26649)Thomas Madlener2-0/+15
2021-10-14phist: Fix build of 1.9.6, fix build- and install-tests (#26727)Bernhard Kaindl1-9/+23
Primary fix: Due to a typo in a version range, overlapping PR merges resulted in a build failure of the latest version: Don't attempt to remove a non-existing file for version 1.9.6. Secondary fixes: update_tpetra_gotypes.patch was mentioned twice, and the version range has to exclude @1.4.2, to which it cannot be applied. Add depend_on() py-pytest, py-numpy and pkgconfig with type='test' @:1.9.0 fail with 'Rank mismatch with gfortran@10:, add a conflicts(). raise InstallError('~mpi not possible with kernel_lib=builtin!') when applicable. Fixes for spack install --test=root phist: mpiexec -n12 puts a lot of stress on a pod and gets stuck in a loop very often: Reduce the mpiexec procs and the number of threads. Remove @run_after('build') @on_package_attributes(run_tests=True): from 'def check()': fixes it from getting called twice The build script of 'make test_install' for the installcheck expects the examples to be copied to self.stage.path: Provide them.
2021-10-14LAMMPS: update recipe for %aocc (#26710)AMD Toolchain Support1-5/+12
* updating the recipe for betterment * addressing the suggesions received from reviewers * adding package helper macros Co-authored-by: mohan002 <mohbabul@amd.com>
2021-10-14Qt: Qt fixes for a Cray AMD system. (#26722)Eric Brugger1-1/+4
* Qt fixes for a Cray AMD system. * Update to latest changes.
2021-10-14Constrain abstract specs rather than concatenating strings in the "when" ↵Massimiliano Culpo1-1/+4
context manager (#26700) Using the Spec.constrain method doesn't work since it might trigger a repository lookup which could break our directives and triggers a circular import error. To fix that we introduce a function to merge abstract anonymous specs, based only on package names, which does not perform any lookup in the repository.
2021-10-13openslide: Fix missing dependencies: gdk-pixbuf and perl-alien-libxml2 (#26620)Bernhard Kaindl3-2/+4
Add missing pkgconfig to openslide and its dep perl-alien-libxml2. Fix shared-mime-info to be a runtime dependency of gdk-pixbuf, Otherwise, configure cannot detect use gdk-pixbuf without error.
2021-10-13r-imager: add depends_on('r+X') and bump version (#26697)Bernhard Kaindl1-0/+2
2021-10-14dealii: @9.3.1 has build errors with boost@1.77.0 - so add dependency on ↵Satish Balay1-0/+2
boost@1.76.0 [or lower] (#26709)
2021-10-13py-mne: add full variant (#26702)Manuela Kuhn1-0/+41