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2020-12-24Starting with HDF5 1.10.0, the H5FD_class_t structure has a new (#20529)QuellynSnead2-0/+13
"terminate" member. Initialize it to NULL.
2020-12-24fftw: PGI compiler has trouble with avx2/avx-512 SIMD support (#20546)QuellynSnead1-3/+8
* PGI compiler has trouble with avx2 SIMD support (https://github.com/FFTW/fftw3/issues/78) * Hew to the project's preferred indentation standard. * Expand '%nvhpc' logic to include '%pgi'. * Exceeded the max line-length. * Break up the long compound statement into nested if's. * Inadvertently picked up an extraneous file. * PGI compiler has trouble with avx2/avx-512 SIMD support, too.
2020-12-24zoltan: Add PGI runtime libs to LDFLAGS (#20547)QuellynSnead1-1/+6
* Add PGI runtime libs to LDFLAGS when '%pgi' in spec. * Revert "Add PGI runtime libs to LDFLAGS when '%pgi' in spec." This reverts commit 31c3ef8ea22156fdeef6f82a29e9cea8ac86f006. * Add PGI runtime libs to LDFLAGS when '%pgi' in spec.
2020-12-24Dropped parametis dependency in 0.82 release (#20481)Kody J. Everson1-1/+1
2020-12-24nbdkit: Fix configure arg (#20488)Tomoyasu Nojiri1-0/+4
2020-12-24Add libvori and support for libvori (and spglib) in CP2K (#20508)Tiziano Müller2-0/+39
* packages: initial commit of libvori * cp2k: add support for libvori * cp2k: add support for spglib
2020-12-24openfoam: update for version 20.12 (#20533)Mark Olesen1-0/+1
Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-12-24Fixed for merging patches for Fujitsu compiler in version 0.3.13 (#20539)a-saitoh-fj1-2/+4
2020-12-24Update to the latest version (1.6.0) (#20540)a-saitoh-fj1-0/+2
2020-12-24mptensor: Add new package (#20542)kuramoto-fj1-0/+55
2020-12-24babelflow: Add spec (#20544)Tomoyasu Nojiri1-0/+1
2020-12-24libgff: new package at version 2.0.0 (#20233)Alexander Baumgarten1-0/+19
* libgff: new package at version 2.0.0 * Removed default cmake function, fixed flake8 error * Fixed errors
2020-12-24sqlite: add 3.34.0 (#20354)Michael Kuhn1-0/+1
2020-12-24py-lxml: Add Version 4.6.1 (#20361)Dr. Christian Tacke1-2/+3
Also switch homepage to https.
2020-12-24New versions: py-sphinxcontrib-bibtex 2.2.0 and py-pybtex-docutils 0.2.2 ↵Paul R. C. Kent2-4/+13
(#20438) * Add v2.0.0 * Add 0.2.2 * Improve packages * No trailing
2020-12-24Add lbann cmake flags (#20452)Brian Van Essen2-30/+40
* Adding support for the CMake flags in LBANN that are missing. * Added new flag to OpenCV dependency and removed negative variants since OpenCV no longer turns on everything by default. Removed CMake flags in LBANN that have been deprecated. * Removed type='build' flags from dependencies so that they get linked into a environment's view. * Removed type='build' flags from dependencies so that they get linked into a environment's view. Fixed DiHydrogen variant to enable DistConv feature, renamed to +distconv from +legacy. Added conflicts line to indicated that DistConv and ROCm don't work with +half support. * Fixed Flake8 and cleaned up ordering of variants. * Flake8 * Backed out changes to not mark and cmake and ninja as build dependencies, which was introduced to make sure that they appear in a spack environment. * Backed out changes to not mark doc related packages as build dependencies, which was introduced to make sure that they appear in a spack environment. * Fixed how recipe communicates the intent to build and run tests to the package CMake.
2020-12-24Add py-ez-setup package file (#20520)Joshua S Brown1-0/+18
* Add py-ez-setup package file * Cleanup formatting * Cleanup formatting take 2
2020-12-24Update ParallelCluster to v2.10.1 (#20524)tilne1-1/+2
Signed-off-by: Tim Lane <tilne@amazon.com>
2020-12-24[gcc] Make ISL optional by adding a +graphite variant (#20531)zorun1-5/+8
Fixes: #20515 Co-authored-by: Baptiste Jonglez <git@bitsofnetworks.org>
2020-12-24[gcc] Explicitly disable libs when they are not required (#20532)zorun1-0/+1
This is to make sure that the build system doesn't pick up a library that would happen to be available. Co-authored-by: Baptiste Jonglez <git@bitsofnetworks.org>
2020-12-23style: ensure that all packages pass `spack style -a`Todd Gamblin28-109/+109
- fix trailing whitespace and other issues uncovered by better flake8 checking. - fix extra whitespace printed by `spack style` command
2020-12-23Add Intel oneAPI packages (#20411)Robert Cohn10-0/+305
This creates a set of packages which all use the same script to install components of Intel oneAPI. This includes: * An inheritable IntelOneApiPackage which knows how to invoke the installation script based on which components are requested * For components which include headers/libraries, an inheritable IntelOneApiLibraryPackage is provided to locate them * Individual packages for DAL, DNN, TBB, etc. * A package for the Intel oneAPI compilers (icx/ifx). This also includes icc/ifortran but these are not currently detected in this PR
2020-12-23papi: patch fortran tests for Cray FTN compiler (#20339)Howard Pritchard2-0/+58
Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2020-12-22Add patch to fix bazel build on power9 (#20512)Harsh Bhatia2-0/+71
* fix bazel on power9 * small fix in tensorflow package * removed import not needed anymore
2020-12-22Patch meson.build llvm config strategy (#20451)Ben Bergen1-0/+6
This patch logic resovles a linking issue with ncurses in the mesa package. This appears to be a recurring problem that was identified in the mesa gitlab issues here: https://gitlab.freedesktop.org/mesa/mesa/-/issues/2843 Using `_llvm_method = 'auto'` is broken. This patch replaces that with `_llvm_method = 'config-tool'`, which is a hack, but makes it possible to build. I have commented on the closed issue (2843), referencing the original author of the bug, and one of the mesa developers, so perhaps they will fix the problem.
2020-12-21Corrected Go dependent build environment. (#18493)Paul1-7/+8
* Dependencies of Go will now correctly set the GOPATH for the appropriate spec to avoid using the user's default path. * Bumped version to latest releases(1.15.6 & 1.14.13).
2020-12-21ParaView: add new ParaView-5.9.0-RC3 release (#20500)Vicente Bolea1-1/+1
Signed-off-by: Vicente Adolfo Bolea Sanchez <vicente.bolea@kitware.com>
2020-12-21clingo: prefer master branchTodd Gamblin1-1/+1
Most people installing `clingo` with Spack are going to be doing it to use the new concretizer, and that requires the `master` branch. - [x] make `master` the default so we don't have to keep telling people to install `clingo@master`. We'll update the preferred version when there's a new release.
2020-12-21New package: PMERGE (#20390)downloadico1-0/+29
2020-12-21upstream dependencies changes (#20493)Karen C. Tsai1-13/+19
* update dependencies and cmake options * add blank line
2020-12-21Added support for AOCC compileramd-toolchain-support1-2/+4
2020-12-20geant4-vmc: Add version 5-3, switch to https (#20379)Dr. Christian Tacke1-3/+4
2020-12-18Add spack test support for Qthreads (#20437)Jan Ciesko1-1/+52
2020-12-18slepc: set --with-arpack-dir correctly (#20463)eugeneswalker1-1/+1
2020-12-18mesa: drop use of shared variant (#20453)Chuck Atkins1-4/+0
Mesa no longer supports building static libraries so it doesn't even make sense to add the variant.
2020-12-17py-greenlet: add version 0.4.17 (#20457)eugeneswalker1-1/+4
* py-greenlet: add version 0.4.17 * py-greenlet depends on python for build, link, and run
2020-12-17meson: Add cmake runtime dependency (#20449)Chuck Atkins1-0/+1
2020-12-17New package: cray-mpich (#20076)Harmen Stoppels2-27/+69
Cray's version of MPICH uses a different versioning system than MPICH, so it has been split into its own package. It is an external-only package (always provided by the system, never installed by Spack).
2020-12-17superlu depends on tcsh for build (#20381)eugeneswalker1-0/+1
2020-12-17cmake: Add Version 3.19.2 (#20448)Dr. Christian Tacke1-0/+1
2020-12-17add py-gemini (#16950)manifest2-0/+88
* py-gemini + * dep py-setuptools + * deps grabix+ * py-gemini dep version fix * grabix compiler fix * Update package.py Typo correction
2020-12-17biobambam2: new package at v2.0.177 (#20392)takanori-ihara1-0/+26
2020-12-17pangolin: add new package (#20388)Adam J. Stewart1-0/+22
2020-12-17kim-api: added v2.2.1 (#20382)Ryan S. Elliott1-1/+2
2020-12-17suite-sparse: add flags for Fujitsu compilers (#20393)ketsubouchi1-2/+2
2020-12-17OpenCV: add versions up to v4.5.0, variants (#20378)Adam J. Stewart1-29/+27
2020-12-17flexi: new package (#20313)Michael Kuhn1-0/+41
2020-12-17openblas: added v0.3.13 (#20357)Michael Kuhn1-0/+6
2020-12-17mbedtls: added v2.16.9 (#20422)Ryan Mast1-0/+1
2020-12-17DBoW2: add new package (#20387)Adam J. Stewart1-0/+21