New package: PMERGE (#20390)

1 files changed, 29 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/pmerge/package.py b/var/spack/repos/builtin/packages/pmerge/package.py
new file mode 100644
index 0000000000..c2844dfe34
--- /dev/null
+++ b/var/spack/repos/builtin/packages/pmerge/package.py
@@ -0,0 +1,29 @@
+# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Pmerge(AutotoolsPackage):
+    """PMERGE implements a new method that identifies candidate PSVs by
+       building networks of loci that share high levels of nucleotide
+       similarity. The PMERGE is embedded in the analysis pipeline of the
+       widely used Stacks software, and it is straightforward to apply it as
+       an additional filter in population-genomic studies using RAD-seq
+       data."""
+
+    homepage = "https://github.com/beiko-lab/PMERGE"
+    git      = "https://github.com/beiko-lab/PMERGE.git"
+
+    version('master',  branch='master')
+
+    depends_on('automake@1.14:1.14.99', type='build')
+    depends_on('autoconf', type='build')
+    depends_on('m4', type='build')
+    depends_on('perl', type='build')
+
+    @property
+    def configure_directory(self):
+        return 'Install'