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2023-04-24maeparser: add v1.3.1 (#37114)Alec Scott1-0/+1
2023-04-24mrcpp: add v1.4.2 (#37115)Alec Scott1-0/+1
2023-04-24msmc2: add v2.1.4 (#37116)Alec Scott1-0/+1
2023-04-24opam: add v2.1.3 (#37117)Alec Scott1-0/+1
2023-04-24openal-soft: add v1.23.1 (#37118)Alec Scott1-0/+1
2023-04-24poke: add v3.1 (#37120)Alec Scott1-0/+1
2023-04-24pugixml: add v1.13 (#37121)Alec Scott1-0/+1
2023-04-24rabbitmq-c: add v0.13.0 (#37122)Alec Scott1-0/+1
2023-04-24rsem: add v1.3.3 (#37123)Alec Scott1-0/+1
2023-04-24sina: add v1.13.0 (#37124)Alec Scott1-0/+1
2023-04-24speexdsp: add v1.2.1 (#37125)Alec Scott1-0/+1
2023-04-24string-view-lite: add v1.7.0 (#37126)Alec Scott1-0/+1
2023-04-24transposome: add v0.12.1 (#37127)Alec Scott1-0/+1
2023-04-24tree-sitter: add v0.20.8 (#37128)Alec Scott1-0/+1
2023-04-24units: add v2.22 (#37129)Alec Scott1-0/+1
2023-04-24vc: add v1.4.3 (#37130)Alec Scott1-0/+1
2023-04-24vtk: add v9.2.6 (#37131)Alec Scott1-0/+1
2023-04-24zstr: add v1.0.7 (#37132)Alec Scott1-0/+1
2023-04-23py-numpy: set openblas `symbol_suffix` in site.cfg (#37134)Wouter Deconinck1-0/+3
* py-numpy: set openblas `symbol_suffix` in site.cfg This writes the correct `symbol_suffix` variant value from the `openblas` in the spec into the `site.cfg`. Fixes #37133. * py-numpy: fix style * py-numpy: handle symbol_suffix == "none"
2023-04-22qgis: unpin qca, update qca (#37049)Andrew W Elble2-1/+2
allows compilation with gcc 11
2023-04-22(py-)codecov: not on pypi anymore, replace by static binary (#36809)Wouter Deconinck2-1/+53
* py-codecov: deprecate since not on pypi anymore * codecov: new package * [@spackbot] updating style on behalf of wdconinc * codecov: use github URL instead, multi-platform * fix: install to prefix.bin.codecov Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * codecov: use versions lookup dict * codecov: versions -> _versions, fix style --------- Co-authored-by: wdconinc <wdconinc@users.noreply.github.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-04-22bubblewrap: add v0.8.0 (#37100)Alec Scott1-0/+1
2023-04-22hwloc: New version 2.9.1 (#37084)Erik Schnetter1-0/+1
2023-04-22openblas: New version 0.3.23 (#36986)Erik Schnetter1-1/+16
Silence make Set a fixed and large NUM_THREADS by default, to avoid that it gets initialized with the host # CPUs. Set OMP_NUM_THREADS/OPENBLAS_NUM_THREADS in terms of make_jobs so that tests don't need excessive CPU. Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-04-21opencascade: new version 7.7.1 (#37057)Wouter Deconinck1-0/+5
No build system or dependency changes necessary. New maintenance release announcement at https://www.opencascade.com/open-cascade-technology-7-7-1-maintenance-release/. Full diff from 7.7.0 to 7.7.1 at https://git.dev.opencascade.org/gitweb/?p=occt.git;a=commitdiff;h=ffce0d66bbaafe3a95984d0e61804c201b9995d2;hp=185d29b92f6764ffa9fc195b7dbe7bba3c4ac855
2023-04-21GDAL: add v3.6.4 (#37087)Adam J. Stewart1-0/+1
2023-04-21librdkafka: add v2.1.0 (#36853)Alec Scott1-0/+1
2023-04-21Metall: add v0.24 and v0.25 (#36981)Keita Iwabuchi1-1/+3
* Metall package: add v0.22, v0.23, and v0.23.1 * Metall package: add v0.24 and v0.25 * Metall package: increase required Boost version
2023-04-21r: fix building :3.6.1 with gcc 10: (#37080)Bryce Torcello1-0/+4
2023-04-21py-cupy allow customizing architecture and threads (#37072)Robert Underwood1-1/+10
* py-cupy allow customizing architecture and threads * Update var/spack/repos/builtin/packages/py-cupy/package.py Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com> * add missing self --------- Co-authored-by: Robert Underwood <runderwood@anl.gov> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-04-21xmlrpc-c: Add variant to enable curl client (#37075)eflumerf1-2/+7
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-04-21Dyninst: add conflict for intel-parallel-studio (#37036)Tim Haines1-0/+1
2023-04-21armpl-gcc: fix PKG_CONFIG_PATH for 23.04 (#37001)Annop Wongwathanarat1-1/+3
2023-04-21interproscan: add version 5.61-93.0, fix build issue (#37009)snehring2-5/+21
2023-04-21augustus: add version 3.5.0 (#37037)Glenn Johnson1-4/+11
Adjust dependencies and constraints.
2023-04-21VisIt: add v3.3.3. (#37034)Eric Brugger1-7/+31
2023-04-21zziplib: support multiple build systems (#37058)Glenn Johnson1-38/+16
This PR rewrites the zziplib recipe to use Spack's multiple build system support.
2023-04-21Add flag handler for mpi-serial (#37060)Brian Vanderwende1-1/+19
2023-04-21arpack-ng: add version 3.9.0 (#37032)Glenn Johnson1-0/+1
2023-04-21edm4hep: add v0.8 (#37006)Thomas Madlener1-0/+1
2023-04-21octopus: add v12.2 (#35487)Ashwin Kumar Karnad1-0/+1
2023-04-21octopus: fix download links (#37081)Ashwin Kumar Karnad1-1/+1
2023-04-21readline: fix for nvhpc (#37024)Harmen Stoppels1-5/+8
2023-04-21glib: new versions 2.76.1, 2.74.7 (#36361)Wouter Deconinck1-10/+21
* glib: new version 2.76.1 This adds a new stable version of glib, 2.76.1 (skipping the 2.75 unstable series). `mkenums.py` check now is specified as a dict, after rhttps://gitlab.gnome.org/GNOME/glib/-/commit/62dca6c1cfd441119cd7bf28a950777d846b5e3d. The `filter_file` should disable both old and new. Better (maybe, but more complicated) would be to add the `can_fail` flag for this test. The `iconv` argument was already deprecated and has now been removed. It is now resolved through meson itself, https://gitlab.gnome.org/GNOME/glib/-/commit/e71ecc8771a4f13bc6046438ab0845944831b9a6. Builds successfully on my system (and several dependents on top of it): ```console ==> glib: Successfully installed glib-2.76.1-7iy4mee2evabd357gviozbtyh5yxi27t ``` as does the previous 2.74.6 version * glib: patch for 2.76.1, new version 2.74.7
2023-04-20add-llvm-1601-1602 (#37026)Paul R. C. Kent1-0/+2
2023-04-20py-ocnn: new package (octree-based sparse CNN) (#37030)Wouter Deconinck1-0/+24
O-CNN is an octree-based sparse convolutional neural network framework for 3D deep learning. It is built on py-torch.
2023-04-20bcache: Simplify check if -lintl shall be added to LDFLAGS (#36569)Bernhard Kaindl1-1/+1
Replace my initial libintl check with the much nicer check for "intl" in self.spec["gettext"].libs.names. Thanks to Chris Green! Co-authored-by: Bernhard Kaindl <bkaindl@gmail.com>
2023-04-20uqtk: bump (#36670)Pariksheet Nanda3-1540/+42
1. support version 3.1.3, which now depends on sundials@6 2. support version 3.1.2:, which broke the two patch files and therefore the two patch files have been replaced by more flexible filter_file() commands inside a patch() function. 3. rename the variant for python extension from using the package name "+pyuqtk" to the more standard "+python" 4. add maintainers @omsai and the upstream developer @bjdebus who offered to help with the spack packaging. 5. swig should only be a build-time dependency. swig is only necessary until @:3.1.0 6. confirmed python dependencies are correct by inspecting imports, subset python dependencies type to build, run, and confirmed all 31 build-time tests pass including the 9 python tests: ```console $ spack env create uqtk-dev $ spack add uqtk@3.1.3 $ spack install --test root && cat $(spack location -i uqtk)/.spack/install-time-test-log.txt ==> Testing package uqtk-3.1.3-nok6fut ==> [2023-04-19-14:56:25.005361] Running build-time tests ==> [2023-04-19-14:56:25.005536] RUN-TESTS: build-time tests [check] ==> [2023-04-19-14:56:25.009543] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' '-n' 'test' ==> [2023-04-19-14:56:25.014903] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' 'test' Running tests... /home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/cmake-3.26.3-zjmsfz23j5l4ytniz26uzvxonlu5qebr/bin/ctest --force-new-ctest-process Test project /tmp/omsai/spack-stage/spack-stage-uqtk-3.1.3-nok6fut47h42cnaau7wkoohgqy5f2qqa/spack-build-nok6fut Start 1: ArrayReadAndWrite Start 2: ArrayDelColumn Start 3: Array1DMiscTest Start 4: Array2DMiscTest 1/31 Test #1: ArrayReadAndWrite ................ Passed 0.01 sec Start 5: ArraySortTest 2/31 Test #2: ArrayDelColumn ................... Passed 0.01 sec Start 6: MultiIndexTest 3/31 Test #3: Array1DMiscTest .................. Passed 0.01 sec Start 7: CorrTest 4/31 Test #4: Array2DMiscTest .................. Passed 0.01 sec Start 8: QuadLUTest 5/31 Test #5: ArraySortTest .................... Passed 0.02 sec Start 9: MCMC2dTest 6/31 Test #6: MultiIndexTest ................... Passed 0.01 sec Start 10: MCMCRandomTest 7/31 Test #8: QuadLUTest ....................... Passed 0.02 sec Start 11: MCMCNestedTest 8/31 Test #10: MCMCRandomTest ................... Passed 0.02 sec Start 12: Deriv1dTest 9/31 Test #12: Deriv1dTest ...................... Passed 0.01 sec Start 13: SecondDeriv1dTest 10/31 Test #13: SecondDeriv1dTest ................ Passed 0.01 sec Start 14: GradHessianTest 11/31 Test #11: MCMCNestedTest ................... Passed 0.03 sec Start 15: GradientPCETest 12/31 Test #14: GradHessianTest .................. Passed 0.01 sec Start 16: PCE1dTest 13/31 Test #15: GradientPCETest .................. Passed 0.01 sec Start 17: PCEImplTest 14/31 Test #16: PCE1dTest ........................ Passed 0.01 sec Start 18: PCELogTest 15/31 Test #18: PCELogTest ....................... Passed 0.01 sec Start 19: Hessian2dTest 16/31 Test #19: Hessian2dTest .................... Passed 0.01 sec Start 20: BCS1dTest 17/31 Test #20: BCS1dTest ........................ Passed 0.01 sec Start 21: BCS2dTest 18/31 Test #21: BCS2dTest ........................ Passed 0.01 sec Start 22: LowRankRegrTest 19/31 Test #22: LowRankRegrTest .................. Passed 0.01 sec Start 23: PyModTest 20/31 Test #17: PCEImplTest ...................... Passed 0.07 sec Start 24: PyArrayTest 21/31 Test #23: PyModTest ........................ Passed 0.08 sec Start 25: PyArrayTest2 22/31 Test #25: PyArrayTest2 ..................... Passed 0.30 sec Start 26: PyQuadTest 23/31 Test #24: PyArrayTest ...................... Passed 1.44 sec Start 27: PyBCSTest1D 24/31 Test #26: PyQuadTest ....................... Passed 1.68 sec Start 28: PyBCSTest2D 25/31 Test #27: PyBCSTest1D ...................... Passed 1.66 sec Start 29: PyBADPTest 26/31 Test #7: CorrTest ......................... Passed 3.43 sec Start 30: PyRegressionTest 27/31 Test #28: PyBCSTest2D ...................... Passed 1.50 sec Start 31: PyGalerkinTest 28/31 Test #9: MCMC2dTest ....................... Passed 3.90 sec 29/31 Test #29: PyBADPTest ....................... Passed 1.66 sec 30/31 Test #30: PyRegressionTest ................. Passed 1.72 sec 31/31 Test #31: PyGalerkinTest ................... Passed 1.63 sec 100% tests passed, 0 tests failed out of 31 Total Test time (real) = 5.35 sec ==> [2023-04-19-14:56:30.382797] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' '-n' 'check' ==> [2023-04-19-14:56:30.385983] Target 'check' not found in Makefile ```
2023-04-20enabling test for rccl hsakmt-roct and rocm-opencl (#35465)afzpatel3-1/+60
* initial commit for enabling test for rccl hsakmt-roct and rocm-opencl * fix styling and cleaning code * adding missing imports and minor fixes * minor style fix * moidfying hsakmt-roct test to run right after installation
2023-04-20nccl-fastsocket: initial packaging for nccl-fastsocket (#36557)Daniel Ahlin1-0/+65
* nccl-fastsocket: Add NCCL transport plugin for GCP * nccl-fastsocket: remove auto-gen. header and fix maintainers * Update var/spack/repos/builtin/packages/nccl-fastsocket/package.py * nccl-fastsocket: Add rationale for setting LD_LIBRARY_PATH --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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