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2023-06-16WarpX 23.06 (#38303)Axel Huebl3-24/+61
* WarpX 23.06 Update WarpX and related Python packages to the lastest releases. WarpX 23.06 introduces multi-dimension support in a single package, which will ease deployment in E4S et al. that can ship now a single, full-feature module/package that is NOT incompatible with itself anymore. * e4s ci stacks: multiple specs for each dim variant no longer required * [@spackbot] updating style on behalf of ax3l * WarpX: Update CMake CLI and Test/Check * Add Missing `build-directory` * [@spackbot] updating style on behalf of ax3l * Remove `build_directory` again --------- Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com> Co-authored-by: ax3l <ax3l@users.noreply.github.com>
2023-06-15Remove experimental hdf5 versions 1.13.x and add hdf5 version 1.10.10. (#38013)Larry Knox5-12/+8
* Remove experimental hdf5 versions 1.13.x. Upgrade to 1.14 or remove dependencies on hdf5 1.13.x. * Revert change to netcdf-c/package.py.
2023-06-15star: add 2.7.10 (#38197)George Young1-4/+15
* star: add 2.7.10 * star: fix building for non-avx2 arch processors * convert to MakefilePackage, second take at fixing for aarch64 * style --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-06-15perl-gd: update to 2.77, update urls (#38413)George Young1-1/+9
* perl-gd: update to 2.77, update urls --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-06-15MXNet: fix flag versions (#38402)Adam J. Stewart1-2/+2
2023-06-15Create package.py file for NIMROD abstract accelerated infrastructure. (#38405)Jacob King1-0/+58
Co-authored-by: jacobrking <jacobrking@users.noreply.github.com>
2023-06-15py-nibabel: add 5.1.0 (#38379)Manuela Kuhn1-2/+12
2023-06-15podio: Add py-tabulate as new run and test dependency (#38409)Thomas Madlener1-0/+1
2023-06-15py-numba: add 0.57.0, update dependency ranges (#38390)George Young1-5/+7
* py-numba: add 0.57.0, update dependency ranges * Update var/spack/repos/builtin/packages/py-numba/package.py Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> * Update var/spack/repos/builtin/packages/py-numba/package.py Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> * Update package.py --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk> Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
2023-06-15py-datalad: add 0.18.4 (#37936)Manuela Kuhn1-1/+3
2023-06-15tests/py-horovod: convert to new stand-alone test process (#38366)Tamara Dahlgren1-3/+4
2023-06-15tests/py-libensemble: convert to new stand-alone test process (#38344)Tamara Dahlgren1-20/+16
2023-06-15tests/py-eccodes: convert to new stand-alone test process (#38346)Tamara Dahlgren1-9/+4
2023-06-15py-neurora: add 1.1.6.10 (#38378)Manuela Kuhn1-0/+1
2023-06-14test/dust: convert to new stand-alone test process (#38367)Tamara Dahlgren1-9/+5
2023-06-14py-nbclient: add 0.8.0 (#38325)Manuela Kuhn1-1/+3
2023-06-14py-nbconvert: add 7.4.0 (#38326)Manuela Kuhn1-19/+20
* py-nbconvert: add 7.4.0 * Move historical dependencies after variant
2023-06-14py-docutils: re-add python@3.7 (#38336)Manuela Kuhn1-0/+1
2023-06-14magma@master: add python dependency (#38341)Satish Balay1-0/+1
2023-06-14edm4hep: Add version 0.9 (#38205)Thomas Madlener1-0/+1
2023-06-14fairmq: Add v1.6.0 (#38392)Dennis Klein1-0/+7
2023-06-14ltp: add v20230516 (#38138)Alec Scott1-0/+1
2023-06-14subread: add 2.0.6, update download paths (#38200)George Young1-4/+4
* subread: add 2.0.6, update download paths * Update var/spack/repos/builtin/packages/subread/package.py --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-06-14openradioss-starter,engine: new package (#38291)kjrstory2-0/+256
* openradioss-starter,engine: new package * openradioss-engine: change version name develop to main * openradioss-starter: change version name develop to main
2023-06-14freeipmi: add v1.6.9 (#38349)Alec Scott1-0/+1
2023-06-14Add Binder spackage (#38371)Kim Liegeois1-0/+54
* Add Binder spackage * Format binder recipe * Format binder recipe
2023-06-14add bioconductor-ebseq (#38380)pabloaledo1-0/+29
* add buiconductor-ebseq Signed-off-by: Pablo <pablo.aledo@seqera.io> --------- Signed-off-by: Pablo <pablo.aledo@seqera.io>
2023-06-14ctffind: Add a patch to fix incorrect return types. (#38085)Rémi Lacroix2-0/+35
Prevent the code from crashing (cf. https://grigoriefflab.umassmed.edu/comment/1696#comment-1696).
2023-06-14dsqss: convert to new stand-alone test process (#38372)Tamara Dahlgren1-6/+15
2023-06-14lastz: add v1.04.22 (#38388)Alec Scott1-0/+2
* lastz: add v1.04.22 * Fix formatting of versions to include extra space
2023-06-14ipopt: add v3.14.9 (#38387)Alec Scott1-0/+1
2023-06-14imath: add v3.1.9 (#38386)Alec Scott1-0/+1
2023-06-14imagemagick: add v7.1.1-11 (#38385)Alec Scott1-0/+1
2023-06-14cgal: add v5.5.2 (#38384)Alec Scott1-0/+1
2023-06-14intel-xed: add version 2023.06.07 (#38373)Mark W. Krentel1-1/+2
Add version 2023.06.07, update python to 3.7.
2023-06-14hpcviewer: add version 2023.05 (#38374)Mark W. Krentel1-0/+5
2023-06-14cloc: add v1.96.1 (#38348)Alec Scott1-0/+1
2023-06-14DaV: Drop propagation of HDF5 to darshan (#38361)kwryankrattiger1-1/+1
Darshan Runtime does not properly link symols for HDF5 when using shared libraries.
2023-06-14hbase: add v2.5.4 (#38353)Alec Scott1-0/+1
2023-06-14fzf: add v0.41.1 (#38351)Alec Scott1-0/+1
2023-06-14hashcat: add v6.2.6 (#38352)Alec Scott1-0/+1
2023-06-14hyperfine: add v1.17.0 (#38354)Alec Scott1-0/+1
2023-06-14ftxui: add v4.1.1 (#38350)Alec Scott1-0/+1
2023-06-14Repeatmodeler 2.0.4 (#38337)snehring2-31/+69
* perl-devel-size: adding new package * repeatmodeler: adding new version 2.0.4 * perl-devel-size: adding proper description
2023-06-14dssp: convert to new stand-alone test process (#38368)Tamara Dahlgren1-10/+6
2023-06-13SU2: add versions up to 7.5.1, update dependencies (#37767)kjrstory2-0/+67
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-06-13add DLA-Future package (#38224)Raffaele Solcà1-0/+135
2023-06-13NWChem: fix fftw3 variant + patch (#38250)Edoardo Aprà2-0/+654
2023-06-13modules: append trailing delimiter to MANPATH when set (#36678)Xavier Delaruelle3-0/+49
Update modulefile templates to append a trailing delimiter to MANPATH environment variable, if the modulefile sets it. With a trailing delimiter at ends of MANPATH's value, man will search the system man pages after searching the specific paths set. Using append-path/append_path to add this element, the module tool ensures it is appended only once. When modulefile is unloaded, the number of append attempt is decreased, thus the trailing delimiter is removed only if this number equals 0. Disclaimer: no path element should be appended to MANPATH by generated modulefiles. It should always be prepended to ensure this variable's value ends with the trailing delimiter. Fixes #11355.
2023-06-12justbuild: bump version 1.1.2 (#38320)Alberto Sartori1-0/+1