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2023-04-21augustus: add version 3.5.0 (#37037)Glenn Johnson1-4/+11
Adjust dependencies and constraints.
2023-04-21VisIt: add v3.3.3. (#37034)Eric Brugger1-7/+31
2023-04-21zziplib: support multiple build systems (#37058)Glenn Johnson1-38/+16
This PR rewrites the zziplib recipe to use Spack's multiple build system support.
2023-04-21Add flag handler for mpi-serial (#37060)Brian Vanderwende1-1/+19
2023-04-21arpack-ng: add version 3.9.0 (#37032)Glenn Johnson1-0/+1
2023-04-21edm4hep: add v0.8 (#37006)Thomas Madlener1-0/+1
2023-04-21octopus: add v12.2 (#35487)Ashwin Kumar Karnad1-0/+1
2023-04-21octopus: fix download links (#37081)Ashwin Kumar Karnad1-1/+1
2023-04-21readline: fix for nvhpc (#37024)Harmen Stoppels1-5/+8
2023-04-21glib: new versions 2.76.1, 2.74.7 (#36361)Wouter Deconinck1-10/+21
* glib: new version 2.76.1 This adds a new stable version of glib, 2.76.1 (skipping the 2.75 unstable series). `mkenums.py` check now is specified as a dict, after rhttps://gitlab.gnome.org/GNOME/glib/-/commit/62dca6c1cfd441119cd7bf28a950777d846b5e3d. The `filter_file` should disable both old and new. Better (maybe, but more complicated) would be to add the `can_fail` flag for this test. The `iconv` argument was already deprecated and has now been removed. It is now resolved through meson itself, https://gitlab.gnome.org/GNOME/glib/-/commit/e71ecc8771a4f13bc6046438ab0845944831b9a6. Builds successfully on my system (and several dependents on top of it): ```console ==> glib: Successfully installed glib-2.76.1-7iy4mee2evabd357gviozbtyh5yxi27t ``` as does the previous 2.74.6 version * glib: patch for 2.76.1, new version 2.74.7
2023-04-20add-llvm-1601-1602 (#37026)Paul R. C. Kent1-0/+2
2023-04-20py-ocnn: new package (octree-based sparse CNN) (#37030)Wouter Deconinck1-0/+24
O-CNN is an octree-based sparse convolutional neural network framework for 3D deep learning. It is built on py-torch.
2023-04-20bcache: Simplify check if -lintl shall be added to LDFLAGS (#36569)Bernhard Kaindl1-1/+1
Replace my initial libintl check with the much nicer check for "intl" in self.spec["gettext"].libs.names. Thanks to Chris Green! Co-authored-by: Bernhard Kaindl <bkaindl@gmail.com>
2023-04-20uqtk: bump (#36670)Pariksheet Nanda3-1540/+42
1. support version 3.1.3, which now depends on sundials@6 2. support version 3.1.2:, which broke the two patch files and therefore the two patch files have been replaced by more flexible filter_file() commands inside a patch() function. 3. rename the variant for python extension from using the package name "+pyuqtk" to the more standard "+python" 4. add maintainers @omsai and the upstream developer @bjdebus who offered to help with the spack packaging. 5. swig should only be a build-time dependency. swig is only necessary until @:3.1.0 6. confirmed python dependencies are correct by inspecting imports, subset python dependencies type to build, run, and confirmed all 31 build-time tests pass including the 9 python tests: ```console $ spack env create uqtk-dev $ spack add uqtk@3.1.3 $ spack install --test root && cat $(spack location -i uqtk)/.spack/install-time-test-log.txt ==> Testing package uqtk-3.1.3-nok6fut ==> [2023-04-19-14:56:25.005361] Running build-time tests ==> [2023-04-19-14:56:25.005536] RUN-TESTS: build-time tests [check] ==> [2023-04-19-14:56:25.009543] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' '-n' 'test' ==> [2023-04-19-14:56:25.014903] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' 'test' Running tests... /home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/cmake-3.26.3-zjmsfz23j5l4ytniz26uzvxonlu5qebr/bin/ctest --force-new-ctest-process Test project /tmp/omsai/spack-stage/spack-stage-uqtk-3.1.3-nok6fut47h42cnaau7wkoohgqy5f2qqa/spack-build-nok6fut Start 1: ArrayReadAndWrite Start 2: ArrayDelColumn Start 3: Array1DMiscTest Start 4: Array2DMiscTest 1/31 Test #1: ArrayReadAndWrite ................ Passed 0.01 sec Start 5: ArraySortTest 2/31 Test #2: ArrayDelColumn ................... Passed 0.01 sec Start 6: MultiIndexTest 3/31 Test #3: Array1DMiscTest .................. Passed 0.01 sec Start 7: CorrTest 4/31 Test #4: Array2DMiscTest .................. Passed 0.01 sec Start 8: QuadLUTest 5/31 Test #5: ArraySortTest .................... Passed 0.02 sec Start 9: MCMC2dTest 6/31 Test #6: MultiIndexTest ................... Passed 0.01 sec Start 10: MCMCRandomTest 7/31 Test #8: QuadLUTest ....................... Passed 0.02 sec Start 11: MCMCNestedTest 8/31 Test #10: MCMCRandomTest ................... Passed 0.02 sec Start 12: Deriv1dTest 9/31 Test #12: Deriv1dTest ...................... Passed 0.01 sec Start 13: SecondDeriv1dTest 10/31 Test #13: SecondDeriv1dTest ................ Passed 0.01 sec Start 14: GradHessianTest 11/31 Test #11: MCMCNestedTest ................... Passed 0.03 sec Start 15: GradientPCETest 12/31 Test #14: GradHessianTest .................. Passed 0.01 sec Start 16: PCE1dTest 13/31 Test #15: GradientPCETest .................. Passed 0.01 sec Start 17: PCEImplTest 14/31 Test #16: PCE1dTest ........................ Passed 0.01 sec Start 18: PCELogTest 15/31 Test #18: PCELogTest ....................... Passed 0.01 sec Start 19: Hessian2dTest 16/31 Test #19: Hessian2dTest .................... Passed 0.01 sec Start 20: BCS1dTest 17/31 Test #20: BCS1dTest ........................ Passed 0.01 sec Start 21: BCS2dTest 18/31 Test #21: BCS2dTest ........................ Passed 0.01 sec Start 22: LowRankRegrTest 19/31 Test #22: LowRankRegrTest .................. Passed 0.01 sec Start 23: PyModTest 20/31 Test #17: PCEImplTest ...................... Passed 0.07 sec Start 24: PyArrayTest 21/31 Test #23: PyModTest ........................ Passed 0.08 sec Start 25: PyArrayTest2 22/31 Test #25: PyArrayTest2 ..................... Passed 0.30 sec Start 26: PyQuadTest 23/31 Test #24: PyArrayTest ...................... Passed 1.44 sec Start 27: PyBCSTest1D 24/31 Test #26: PyQuadTest ....................... Passed 1.68 sec Start 28: PyBCSTest2D 25/31 Test #27: PyBCSTest1D ...................... Passed 1.66 sec Start 29: PyBADPTest 26/31 Test #7: CorrTest ......................... Passed 3.43 sec Start 30: PyRegressionTest 27/31 Test #28: PyBCSTest2D ...................... Passed 1.50 sec Start 31: PyGalerkinTest 28/31 Test #9: MCMC2dTest ....................... Passed 3.90 sec 29/31 Test #29: PyBADPTest ....................... Passed 1.66 sec 30/31 Test #30: PyRegressionTest ................. Passed 1.72 sec 31/31 Test #31: PyGalerkinTest ................... Passed 1.63 sec 100% tests passed, 0 tests failed out of 31 Total Test time (real) = 5.35 sec ==> [2023-04-19-14:56:30.382797] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' '-n' 'check' ==> [2023-04-19-14:56:30.385983] Target 'check' not found in Makefile ```
2023-04-20enabling test for rccl hsakmt-roct and rocm-opencl (#35465)afzpatel3-1/+60
* initial commit for enabling test for rccl hsakmt-roct and rocm-opencl * fix styling and cleaning code * adding missing imports and minor fixes * minor style fix * moidfying hsakmt-roct test to run right after installation
2023-04-20nccl-fastsocket: initial packaging for nccl-fastsocket (#36557)Daniel Ahlin1-0/+65
* nccl-fastsocket: Add NCCL transport plugin for GCP * nccl-fastsocket: remove auto-gen. header and fix maintainers * Update var/spack/repos/builtin/packages/nccl-fastsocket/package.py * nccl-fastsocket: Add rationale for setting LD_LIBRARY_PATH --------- Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-04-20osu-micro-benchmarks: adding sha for 7.1 release (#36702)MatthewLieber1-0/+2
* adding sha for 7.1 release * add a new version --------- Co-authored-by: Matt Lieber <lieber.31@osu.edu>
2023-04-20Fix bigdft-suite compilation (#36612)Ashwin Kumar Karnad7-62/+59
(from https://github.com/danielecesarini/spack/commit/d20f2841009eb037344e73516d38716769643e4b)
2023-04-20osg-ca-certs: igtf link should point to version, not 'current' (#35977)Wouter Deconinck1-2/+8
* osg-ca-certs: igtf link should point to version, not 'current' * osg-ca-certs: new version 1.110.igtf.1.119 * [@spackbot] updating style on behalf of wdconinc --------- Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-04-20hiprand: split into new package (#36798)Cory Bloor2-7/+127
2023-04-20py-kornia: add v0.6.12 (#37074)Adam J. Stewart1-0/+1
2023-04-20libxaw3d: add v1.6.4 (#36854)Alec Scott1-0/+1
2023-04-20bamutil: fix filter_file invocation (#36978)snehring1-1/+1
2023-04-20gmap-gsnap: adding new version 2023-03-24 (#36983)snehring1-0/+3
2023-04-20netlib-lapack: New version 3.11.0 (#36984)Erik Schnetter1-0/+5
2023-04-20lammps: add linking with acfl for FFT (#37000)Annop Wongwathanarat1-1/+1
2023-04-20Upgrade to STRUMPACK v7.1.0, update minimum CMake version (#37014)Pieter Ghysels1-1/+5
* Upgrade to STRUMPACK v7.1.0, update minimum CMake version * Update to v7.1.1, which has a fix for ROCm
2023-04-20ants: add version 2.4.3 (#37031)Glenn Johnson1-1/+2
* ants: add version 2.4.3 - add version 2.4.3 - deprecate old git version * [@spackbot] updating style on behalf of glennpj --------- Co-authored-by: glennpj <glennpj@users.noreply.github.com>
2023-04-20Add new package MozJPEG (#37052)Rémi Lacroix1-0/+48
* Add new package MozJPEG MozJPEG is a patched version of libjpeg-turbo which improves JPEG compression efficiency achieving higher visual quality and smaller file sizes at the same time. * MozJPEG: Add myself as a maintainer and fix style
2023-04-20atompaw: add version 4.2.0.2 (#37035)Glenn Johnson1-0/+1
2023-04-20emacs: default to +tls true (#37038)Alec Scott1-1/+3
* emacs: default to +tls true * Add myself as a maintainer for emacs pkg
2023-04-20stream optimization for aocc (#37039)AMD Toolchain Support1-0/+2
2023-04-20poppler-data: new version 0.4.12 (#37042)Olivier Cessenat1-0/+1
2023-04-20poppler: new version 23.04.0 (#37043)Olivier Cessenat1-0/+1
2023-04-20gxsview: new version 2022.11.04 (#37050)Olivier Cessenat1-0/+3
2023-04-20netpbm: new version 10.73.43 (#37051)Olivier Cessenat1-0/+1
2023-04-20py-lightly: add v1.4.2 (#37053)Adam J. Stewart1-2/+5
* py-lightly: add v1.4.2 * pytorch and lightning 2.0 now supported
2023-04-20Add scotch-7.0.3 checksum. (#37054)Cameron Book1-0/+1
2023-04-20Provide version 1.16 of lcov; volunteer to be maintainer. (#37056)Kelly (KT) Thompson1-0/+2
2023-04-20rmgdft: new version 5.2.0 (#37059)Emil Briggs1-1/+2
* Update for v5.0.4 release. * Updated for version 5.0.5. * Updated for new release.
2023-04-20prism: adding new version 4.7 and java version restriction (#37061)snehring1-1/+5
2023-04-20gftl: add version 1.9.0, 1.10.0 (#37062)Matthew Thompson1-0/+2
2023-04-20gftl-shared: add version 1.6.0 (#37063)Matthew Thompson1-0/+1
2023-04-20mpitrampoline: New version 5.3.0 (#37065)Erik Schnetter1-0/+1
2023-04-20fargparse: add version 1.5.0 (#37066)Matthew Thompson1-0/+1
2023-04-20pfunit: add version 4.7.0 (#37067)Matthew Thompson1-0/+1
2023-04-20yafyaml: add version 1.1.0 (#37068)Matthew Thompson1-0/+1
2023-04-20pflogger: add version 1.9.5, 1.10.0 (#37069)Matthew Thompson1-0/+2
2023-04-20adios2: add latest release (#36563)Vicente Bolea5-0/+242
2023-04-20r-renv: add v0.17.3 (#36944)Alec Scott1-0/+1
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