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otherwise petsc may pickup libX11 on login nodes during config/build,
but libX11 may not be available on computation nodes.
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* Added package 'uuid'.
* Added package 'cmor'.
* Updated 'cmor' and 'uuid': docstring formatting.
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* Add support for parsing R-XML URL versions.
* Better url-parse debug output.
- just print the debug stuff all the time.
* fix R-XML versions.
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* Update emacs: current release, use our x11 bits
Add checksum for 25.1 release.
Rework the X support:
- use Spack's X11 bits
- add ability to specify an X toolkit (gtk or athena, default is gtk).
- change toolkit names to align with Emacs' configure usage.
* PEP8 cleanups.
* glib dependency should not be type=build
I'd like to blame that on a typo, but it's a few too many characters
for that to be viable. I'm not sure what I was thinking.
* Pass X variant down: emacs->pango->cairo
* X variants default to False, warn on bad toolkit
Change the X variants for emacs, pango and cairo to default to False.
Check that the toolkit is a valid choice and give a reasonable error if
not.
* Fix flake8 issue, reword warning text
* gtkplus needs to use +X variant for pango to work
In order for a useful variant of pango to be built into the spec I
needed to make the dependency on gtkplus explicitly specify it's X
variant. The X variant is the default, but that wasn't enough to make
it happy. Since it's happiness is the most imporant thing in the
world, this change! :)
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* Add version/digest for emacs 25.1
* Put newest version at top of list
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yaml-cpp has a boost dependency, and according to [yaml-cpp
page](https://github.com/jbeder/yaml-cpp):
yaml-cpp 0.5.3 has been released! This is a bug fix release. It also
will be the last release that uses Boost; futures releases will require
C++11 instead.
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See #2059 for background.
I'm unable to install `lmod` because lua-luafilesystem fails.
The luarocks install bits attempt to do a shallow clone of the luafilesystem
sources and the default git on my CentOS 7 test box (`git version 1.8.3.1`)
fails.
This adds a build dependency that ensures that a relatively modern git is
available.
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* Update texlive digest value
While the discussion in #2494 progresses, this changes fixes the digest
values so that builds succeeed.
* Add warning that texlive is not repeatably installable
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these packages (#2443)
Funded-by: IDEAS
Project: IDEAS/xSDK
Time: 1 hour
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* Update OpenMPI to the AutotoolsPackage
* Add Java support to OpenMPI
* Fix missing commas
* Be more specific about what versions support what flags
* Revert description for thread_multiple variant
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* py-rtree: Added package
* py-rtree = RTree (spatial indexing) data structure for Python
* libspatialindex = Underlying C library wrapped by py-rtree
* Flake8 and Copyright issues.
* Fix Python syntax error.
* Fixed dependency type error.
* Added new version, based on updates requested in upstream PR
* 1. Change cmake to build dependency.
2. Updated to CMakePackage
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* Update go to 1.7.4 and 1.6.4 to fix security issues
The go team recently rolled out two releases to address security
issues. Details available on the [go release
site](https://golang.org/doc/devel/release.html).
This commit updates our explicitly supported versions.
It also includes a comment about two CentOS requirements (enable
user_namespace and ensure that the static c library is installed) that
are required for the pacakges to pass their tests.
* Flake8 cleanup
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It looks more complicated because zlib has custom configure which does
not support CFLAGS option. So instead, we take it from environment.
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* fix download URL and dependencies for py-pypar
* use url_for_version in py-pypar
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* Modification to accept flex version >= 2.6 + bug fix on paraview dependency
* flake8 "corrections"
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specific version for default install method. (#2456)
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The option appeared in CMake 3.2 (specifically, in 3.2.0-rc2, see
https://cmake.org/pipermail/cmake-developers/2015-February/024552.html).
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* Make X11 font install dir the font search default
We install the X11 fonts into `/share/fonts` beneath the font-util
installation prefix, but that directory is not one of the places that
the font subsystem searches.
This commit makes the fontconfig package depend on the font-util
package, and then it makes
```python
spec['font-util'].prefix + "/share/fonts"
```
be the fontconfig default font location.
Before this change, plots drawn by R have bounding boxes where font
glyphs should be. After this change fonts appear as expected.
* Enrich description string (trigger new CI run)
Improve the docstring for the package.
Also interested in the side effect of triggering another CI run
to see if the recent flake8 fix lets this PR run clean.
* Flake8 cleanups
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* add missing py-numpy dependency to scipy
* add missing setuptools build dependency to py-argcomplete
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* Updated hdf5: new versions added.
* Updated hdf5: url_for_version() accounts for per-version urls.
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intel-parallel-studio: fix location of MKL libs
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* Update R&friends to use our X11 libs
Add `depends_on()`'s for R, Cairo, and Tk so that they use the Spack X
bits.
* Conditionalize X stuff on variant
Another step towards hooking up the X stuff.
There's still discussion happening on the issue, but this is better
than the 'everything must build with X' state that it was in.
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* New package - r-irkernel
* New package - r-pbdzmq, dependency of r-irkernel
* Adding blank line expected by flake8 tests
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Fixed a bug that was causing memory errors after asserts in 'tetgen@1.5.0'.
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This corrects a severe problem (segfault) on macos Sierra.
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Funded-by: IDEAS
Project: IDEAS/xSDK
Time: .3 hours
x
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* Fix building latest version of flex
* Don't need when clause
* Remove perl deps, shebang too long
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* New package - r-rinside
* Changes to pass flake8 test
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