var/spack/packages/bowtie2/bowtie2-2.5.patch


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--- Makefile	2015-02-26 10:50:00.000000000 -0800
+++ Makefile.new	2015-07-29 18:03:59.891357399 -0700
@@ -22,10 +22,10 @@
 #
 
 INC =
-GCC_PREFIX = $(shell dirname `which gcc`)
+GCC_PREFIX =
 GCC_SUFFIX =
-CC = $(GCC_PREFIX)/gcc$(GCC_SUFFIX)
-CPP = $(GCC_PREFIX)/g++$(GCC_SUFFIX)
+CC = cc 
+CPP = c++
 CXX = $(CPP)
 HEADERS = $(wildcard *.h)
 BOWTIE_MM = 1