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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Adios(AutotoolsPackage):
"""The Adaptable IO System (ADIOS) provides a simple,
flexible way for scientists to describe the
data in their code that may need to be written,
read, or processed outside of the running simulation.
"""
homepage = "https://www.olcf.ornl.gov/center-projects/adios/"
url = "https://github.com/ornladios/ADIOS/archive/v1.12.0.tar.gz"
git = "https://github.com/ornladios/ADIOS.git"
maintainers("ax3l")
version("develop", branch="master")
version("1.13.1", sha256="b1c6949918f5e69f701cabfe5987c0b286793f1057d4690f04747852544e157b")
version("1.13.0", sha256="7b5ee8ff7a5f7215f157c484b20adb277ec0250f87510513edcc25d2c4739f50")
version("1.12.0", sha256="22bc22c157322abec2d1a0817a259efd9057f88c2113e67d918a9a5ebcb3d88d")
version("1.11.1", sha256="9f5c10b9471a721ba57d1cf6e5a55a7ad139a6c12da87b4dc128539e9eef370e")
version("1.11.0", sha256="e89d14ccbe7181777225e0ba6c272c0941539b8ccd440e72ed5a9457441dae83")
version("1.10.0", sha256="6713069259ee7bfd4d03f47640bf841874e9114bab24e7b0c58e310c42a0ec48")
version("1.9.0", sha256="23b2bb70540d51ab0855af0b205ca484fd1bd963c39580c29e3133f9e6fffd46")
variant("shared", default=True, description="Builds a shared version of the library")
variant("fortran", default=False, description="Enable Fortran bindings support")
variant("mpi", default=True, description="Enable MPI support")
variant("infiniband", default=False, description="Enable infiniband support")
# transforms
variant("zlib", default=True, description="Enable zlib transform support")
variant("bzip2", default=False, description="Enable bzip2 transform support")
variant("szip", default=False, description="Enable szip transform support")
variant("zfp", default=True, description="Enable ZFP transform support")
variant("sz", default=True, description="Enable SZ transform support")
variant("lz4", default=True, description="Enable LZ4 transform support")
variant("blosc", default=True, description="Enable Blosc transform support")
# transports and serial file converters
variant(
"hdf5",
default=False,
description="Enable parallel HDF5 transport and serial bp2h5 " + "converter",
)
variant("netcdf", default=False, description="Enable netcdf support")
variant(
"staging",
values=any_combination_of("flexpath", "dataspaces"),
description="Enable dataspaces and/or flexpath staging transports",
)
depends_on("autoconf", type="build")
depends_on("automake", type="build")
depends_on("m4", type="build")
depends_on("libtool", type="build")
depends_on("python", type="build")
depends_on("mpi", when="+mpi")
# optional transformations
depends_on("zlib-api", when="+zlib")
depends_on("bzip2", when="+bzip2")
depends_on("szip", when="+szip")
depends_on("sz@:1.4.10", when="@:1.12.0 +sz")
depends_on("sz@1.4.11.0:1.4.11", when="@1.13.0 +sz")
depends_on("sz@1.4.12.3:1.4.12", when="@1.13.1: +sz")
depends_on("zfp@0.5.1:0.5", when="+zfp")
depends_on("lz4", when="+lz4")
depends_on("c-blosc@1.12.0:", when="+blosc")
# optional transports & file converters
depends_on("hdf5@1.8:+hl+mpi", when="+hdf5")
depends_on("netcdf-c", when="+netcdf")
depends_on("libevpath", when="staging=flexpath")
depends_on("dataspaces+mpi", when="staging=dataspaces")
for p in ["+hdf5", "+netcdf", "staging=flexpath", "staging=dataspaces"]:
conflicts(p, when="~mpi")
build_directory = "spack-build"
# ADIOS uses the absolute Python path, which is too long and results in
# "bad interpreter" errors - but not applicable for 1.9.0
patch("python.patch", when="@1.10.0:")
# Fix ADIOS <=1.10.0 compile error on HDF5 1.10+
# https://github.com/ornladios/ADIOS/commit/3b21a8a41509
# https://github.com/spack/spack/issues/1683
patch("adios_1100.patch", when="@:1.10.0^hdf5@1.10:")
# ADIOS 1.13.1 is written for ZFP 0.5.0 interfaces
# https://github.com/ornladios/ADIOS/pull/204
patch("zfp051.patch", when="@1.11.0:1.13.1")
# Fix a bug in configure.ac that causes automake issues on RHEL 7.7
patch(
"https://github.com/ornladios/ADIOS/pull/207.patch?full_index=1",
when="@1.12.0: +mpi",
sha256="aea47e56013b57c2d5d36e23e0ae6010541c3333a84003784437768c2e350b05",
)
def validate(self, spec):
"""Checks if incompatible variants have been activated at the same time
Args:
spec: spec of the package
Raises:
RuntimeError: in case of inconsistencies
"""
if "+fortran" in spec and not self.compiler.fc:
msg = "cannot build a fortran variant without a fortran compiler"
raise RuntimeError(msg)
def with_or_without_hdf5(self, activated):
if activated:
return f"--with-phdf5={self.spec['hdf5'].prefix}"
return "--without-phdf5"
def setup_build_environment(self, env):
# https://github.com/ornladios/ADIOS/issues/206
if self.spec.satisfies("%gcc@10: +fortran"):
env.set("FCFLAGS", "-fallow-argument-mismatch")
def configure_args(self):
spec = self.spec
self.validate(spec)
extra_args = [
# required, otherwise building its python bindings will fail
f"CFLAGS={self.compiler.cc_pic_flag}"
]
extra_args += self.enable_or_disable("shared")
extra_args += self.enable_or_disable("fortran")
if "+mpi" in spec:
env["MPICC"] = spec["mpi"].mpicc
env["MPICXX"] = spec["mpi"].mpicxx
extra_args += self.with_or_without("mpi", activation_value="prefix")
extra_args += self.with_or_without("infiniband")
if "+zlib" in spec:
extra_args.append(f"--with-zlib={spec['zlib-api'].prefix}")
else:
extra_args.append("--without-zlib")
# Transforms
variants = ["bzip2", "szip"]
if spec.satisfies("@1.11.0:"):
variants += ["zfp"]
if spec.satisfies("@1.12.0:"):
variants += ["sz", "lz4"]
if spec.satisfies("@1.13.0:"):
extra_args += self.with_or_without(
"blosc", activation_value=lambda x: spec["c-blosc"].prefix
)
# External I/O libraries
variants += ["hdf5", "netcdf"]
for x in variants:
extra_args += self.with_or_without(x, activation_value="prefix")
# Staging transports
def with_staging(name):
if name == "flexpath":
return spec["libevpath"].prefix
return spec[name].prefix
extra_args += self.with_or_without("staging", activation_value=with_staging)
return extra_args
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