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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
import os
class Adios2(CMakePackage):
"""The Adaptable Input Output System version 2,
developed in the Exascale Computing Program"""
homepage = "https://csmd.ornl.gov/software/adios2"
url = "https://github.com/ornladios/ADIOS2/archive/v2.6.0.tar.gz"
git = "https://github.com/ornladios/ADIOS2.git"
maintainers = ['ax3l', 'chuckatkins', 'williamfgc']
version('master', branch='master')
version('2.7.1', sha256='c8e237fd51f49d8a62a0660db12b72ea5067512aa7970f3fcf80b70e3f87ca3e')
version('2.7.0', sha256='4b5df1a1f92d7ff380416dec7511cfcfe3dc44da27e486ed63c3e6cffb173924')
version('2.6.0', sha256='45b41889065f8b840725928db092848b8a8b8d1bfae1b92e72f8868d1c76216c')
version('2.5.0', sha256='7c8ff3bf5441dd662806df9650c56a669359cb0185ea232ecb3578de7b065329')
version('2.4.0', sha256='50ecea04b1e41c88835b4b3fd4e7bf0a0a2a3129855c9cc4ba6cf6a1575106e2')
version('2.3.1', sha256='3bf81ccc20a7f2715935349336a76ba4c8402355e1dc3848fcd6f4c3c5931893')
# general build options
variant('mpi', default=True, description='Enable MPI')
variant('build_type', default='Release',
description='CMake build type',
values=('Debug', 'Release', 'RelWithDebInfo', 'MinSizeRel'))
variant('shared', default=True,
description='Also build shared libraries')
variant('pic', default=True,
description='Enable position independent code '
'(for usage of static in shared downstream deps)')
variant('endian_reverse', default=False,
description='Enable endian conversion if a different '
'endianness is detected between write and read.')
# compression libraries
variant('blosc', default=True,
description='Enable Blosc compression')
variant('bzip2', default=True,
description='Enable BZip2 compression')
variant('zfp', default=True,
description='Enable ZFP compression')
variant('png', default=True,
description='Enable PNG compression')
variant('sz', default=True,
description='Enable SZ compression')
# transport engines
variant('sst', default=True,
description='Enable the SST staging engine')
variant('dataman', default=False,
description='Enable the DataMan engine for WAN transports')
variant('dataspaces', default=False,
description='Enable support for DATASPACES')
variant('ssc', default=True,
description='Enable the SSC staging engine')
variant('hdf5', default=False,
description='Enable the HDF5 engine')
# optional language bindings, C++11 and C always provided
variant('python', default=False,
description='Enable the Python bindings')
variant('fortran', default=True,
description='Enable the Fortran bindings')
# requires mature C++11 implementations
conflicts('%gcc@:4.7')
conflicts('%intel@:15')
conflicts('%pgi@:14')
# shared libs must have position-independent code
conflicts('+shared ~pic')
# DataMan needs dlopen
conflicts('+dataman', when='~shared')
depends_on('cmake@3.12.0:', type='build')
depends_on('pkgconfig', type='build')
depends_on('libffi', when='+sst') # optional in DILL
depends_on('libfabric@1.6.0:', when='+sst') # optional in EVPath and SST
# depends_on('bison', when='+sst') # optional in FFS, broken package
# depends_on('flex', when='+sst') # optional in FFS, depends on BISON
depends_on('mpi', when='+mpi')
depends_on('libzmq', when='+dataman')
depends_on('dataspaces@1.8.0:', when='+dataspaces')
depends_on('hdf5', when='+hdf5')
depends_on('hdf5+mpi', when='+hdf5+mpi')
depends_on('c-blosc', when='@2.4: +blosc')
depends_on('bzip2', when='@2.4: +bzip2')
depends_on('libpng@1.6:', when='@2.4: +png')
depends_on('zfp@0.5.1:', when='+zfp')
depends_on('sz@2.0.2.0:', when='+sz')
extends('python', when='+python')
depends_on('python@2.7:2.8,3.5:', when='@:2.4.0 +python', type=('build', 'run'))
depends_on('python@3.5:', when='@2.5.0: +python', type=('build', 'run'))
depends_on('python@2.7:2.8,3.5:', when='@:2.4.0', type='test')
depends_on('python@3.5:', when='@2.5.0:', type='test')
depends_on('py-numpy@1.6.1:', type=('build', 'run'), when='+python')
depends_on('py-mpi4py@2.0.0:', type=('build', 'run'), when='+mpi +python')
# Fix findmpi when called by dependees
# See https://github.com/ornladios/ADIOS2/pull/1632
patch('cmake-update-findmpi.patch', when='@2.4.0')
# Fix the signature of the builtin clear_cache function in the
# third-party dill library.
# See https://github.com/ornladios/ADIOS2/pull/1899
patch('2.5-fix-clear_cache.patch', when='@2.5.0')
# Fix an unnecessary python dependency when testing is disabled
# See https://github.com/ornladios/ADIOS2/pull/2596
patch('2.7-fix-python-test-deps.patch', when='@2.5.0:2.7.0')
@when('%fj')
def patch(self):
""" add fujitsu mpi commands #16864 """
f = join_path('cmake', 'upstream', 'FindMPI.cmake')
filter_file('mpcc_r)', 'mpcc_r mpifcc)', f, string=True)
filter_file('mpc++_r)', 'mpcc_r mpiFCC)', f, string=True)
filter_file('mpf77_r', 'mpf77_r mpifrt', f, string=True)
def setup_build_environment(self, env):
# https://github.com/ornladios/ADIOS2/issues/2228
if self.spec.satisfies('%gcc@10: +fortran'):
env.set('FFLAGS', '-fallow-argument-mismatch')
elif self.spec.satisfies('%fj +fortran'):
env.set('FFLAGS', '-Ccpp')
def cmake_args(self):
spec = self.spec
from_variant = self.define_from_variant
args = [
from_variant('BUILD_SHARED_LIBS', 'shared'),
'-DADIOS2_BUILD_EXAMPLES=OFF',
from_variant('ADIOS2_USE_MPI', 'mpi'),
'-DADIOS2_USE_MGARD=OFF',
from_variant('ADIOS2_USE_ZFP', 'zfp'),
from_variant('ADIOS2_USE_SZ', 'sz'),
from_variant('ADIOS2_USE_DataMan', 'dataman'),
from_variant('ADIOS2_USE_SST', 'sst'),
from_variant('ADIOS2_USE_HDF5', 'hdf5'),
from_variant('ADIOS2_USE_Python', 'python'),
from_variant('ADIOS2_USE_Fortran', 'fortran'),
from_variant('ADIOS2_USE_Endian_Reverse', 'endian_reverse'),
self.define('BUILD_TESTING', self.run_tests),
]
if spec.version >= Version('2.4.0'):
args.append(from_variant('ADIOS2_USE_Blosc', 'blosc'))
args.append(from_variant('ADIOS2_USE_BZip2', 'bzip2'))
args.append(from_variant('ADIOS2_USE_PNG', 'png'))
args.append(from_variant('ADIOS2_USE_SSC', 'ssc'))
if spec.version >= Version('2.5.0'):
args.append(from_variant('ADIOS2_USE_DataSpaces', 'dataspaces'))
if spec.version >= Version('2.6.0'):
args.append('-DADIOS2_USE_IME=OFF')
if '+sst' in spec:
args.extend([
# Broken dependency package
'-DCMAKE_DISABLE_FIND_PACKAGE_BISON=TRUE',
# Depends on ^
'-DCMAKE_DISABLE_FIND_PACKAGE_FLEX=TRUE',
# Not yet packaged
'-DCMAKE_DISABLE_FIND_PACKAGE_CrayDRC=TRUE',
'-DCMAKE_DISABLE_FIND_PACKAGE_NVSTREAM=TRUE'
])
if spec.satisfies('~shared'):
args.append(from_variant('CMAKE_POSITION_INDEPENDENT_CODE', 'pic'))
if spec.satisfies('%fj'):
args.extend([
'-DCMAKE_Fortran_SUBMODULE_EXT=.smod',
'-DCMAKE_Fortran_SUBMODULE_SEP=.'
])
if spec.satisfies('+python') or self.run_tests:
args.append('-DPYTHON_EXECUTABLE:FILEPATH=%s'
% spec['python'].command.path)
return args
@property
def libs(self):
spec = self.spec
libs_to_seek = set()
if spec.satisfies('@2.6:'):
libs_to_seek.add('libadios2_core')
libs_to_seek.add('libadios2_c')
libs_to_seek.add('libadios2_cxx11')
if '+fortran' in spec:
libs_to_seek.add('libadios2_fortran')
if '+mpi' in spec:
libs_to_seek.add('libadios2_core_mpi')
libs_to_seek.add('libadios2_c_mpi')
libs_to_seek.add('libadios2_cxx11_mpi')
if '+fortran' in spec:
libs_to_seek.add('libadios2_fortran_mpi')
if (self.spec.satisfies('@2.7: +shared+hdf5') and
self.spec['hdf5'].satisfies('@1.12:')):
libs_to_seek.add('libadios2_h5vol')
else:
libs_to_seek.add('libadios2')
if '+fortran' in spec:
libs_to_seek.add('libadios2_fortran')
return find_libraries(list(libs_to_seek), root=self.spec.prefix,
shared=('+shared' in spec), recursive=True)
def setup_run_environment(self, env):
try:
all_libs = self.libs
idx = all_libs.basenames.index('libadios2_h5vol.so')
env.prepend_path('HDF5_PLUGIN_PATH', os.path.dirname(all_libs[idx]))
except ValueError:
pass
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