var/spack/repos/builtin/packages/allpaths-lg/package.py


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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class AllpathsLg(AutotoolsPackage):
    """ALLPATHS-LG is our original short read assembler and it works on both
       small and large (mammalian size) genomes."""

    homepage = "https://www.broadinstitute.org/software/allpaths-lg/blog/"
    url      = "ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/allpathslg-52488.tar.gz"

    version('52488', sha256='035b49cb21b871a6b111976757d7aee9c2513dd51af04678f33375e620998542')

    # compiles with gcc 4.7.0 to 4.9.4)
    conflicts('%gcc@:4.6.4,5.1.0:')
    conflicts('%cce')
    conflicts('%apple-clang')
    conflicts('%clang')
    conflicts('%intel')
    conflicts('%nag')
    conflicts('%pgi')
    conflicts('%xl')
    conflicts('%xl_r')