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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Beast1(Package):
"""BEAST is a cross-platform program for Bayesian
analysis of molecular sequences using MCMC."""
homepage = "https://beast.community/"
version("1.10.4", sha256="be652c4d55953f7c6c7a9d3eb3de203c77dc380e81ad81cfe0492408990c36a8")
version("1.8.4", sha256="c14e93976008463108aefa34ecc23287ab70703caccf4962e36e295207120d78")
variant("beagle", default=True, description="Build with libbeagle support")
depends_on("java", type="run")
depends_on("libbeagle", type=("build", "link", "run"), when="+beagle")
def url_for_version(self, ver):
base = "https://github.com/beast-dev/beast-mcmc/releases/download"
return "{0}/v{1}/BEASTv{1}.tgz".format(base, ver.dotted)
def setup_run_environment(self, env):
env.set("BEAST1", self.prefix)
env.set("BEAST_LIB", self.prefix.lib)
def install(self, spec, prefix):
install_tree("bin", prefix.bin)
install_tree("examples", prefix.examples)
install_tree("images", prefix.images)
install_tree("lib", prefix.lib)
install_tree("doc", prefix.doc)
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