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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Beast1(Package):
"""BEAST is a cross-platform program for Bayesian
analysis of molecular sequences using MCMC."""
homepage = "https://beast.community/"
version('1.10.4', sha256='be652c4d55953f7c6c7a9d3eb3de203c77dc380e81ad81cfe0492408990c36a8')
version('1.8.4', sha256='c14e93976008463108aefa34ecc23287ab70703caccf4962e36e295207120d78')
variant('beagle', default=True, description='Build with libbeagle support')
depends_on('java', type='run')
depends_on('libbeagle', type=('build', 'link', 'run'), when="+beagle")
def url_for_version(self, ver):
base = 'https://github.com/beast-dev/beast-mcmc/releases/download'
return '{0}/v{1}/BEASTv{1}.tgz'.format(base, ver.dotted)
def setup_run_environment(self, env):
env.set('BEAST1', self.prefix)
env.set('BEAST_LIB', self.prefix.lib)
def install(self, spec, prefix):
install_tree('bin', prefix.bin)
install_tree('examples', prefix.examples)
install_tree('images', prefix.images)
install_tree('lib', prefix.lib)
install_tree('doc', prefix.doc)
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