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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Beast1(Package):
"""BEAST is a cross-platform program for Bayesian
analysis of molecular sequences using MCMC."""
homepage = "http://beast.community/"
url = "https://github.com/beast-dev/beast-mcmc/releases/download/v1.8.4/BEASTv1.8.4.tgz"
version('1.10.0', 'bcf2f2c074319360ec8a2ebad57d2e57',
url='https://github.com/beast-dev/beast-mcmc/releases/download/v1.10.0/BEAST_v1.10.0.tgz')
version('1.8.4', 'cb8752340c1f77a22d39ca4fe09687b0')
variant('beagle', default=True, description='Build with libbeagle support')
depends_on('java', type='run')
depends_on('libbeagle', type=('build', 'link', 'run'), when="+beagle")
def setup_environment(self, spack_env, run_env):
run_env.set('BEAST1', self.prefix)
def install(self, spec, prefix):
install_tree('bin', prefix.bin)
install_tree('examples', prefix.examples)
install_tree('images', prefix.images)
install_tree('lib', prefix.lib)
install_tree('doc', prefix.doc)
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