1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
|
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Beast1(Package):
"""BEAST is a cross-platform program for Bayesian
analysis of molecular sequences using MCMC."""
homepage = "http://beast.community/"
version('1.10.4', sha256='be652c4d55953f7c6c7a9d3eb3de203c77dc380e81ad81cfe0492408990c36a8')
version('1.10.0', 'bcf2f2c074319360ec8a2ebad57d2e57')
version('1.8.4', 'cb8752340c1f77a22d39ca4fe09687b0')
variant('beagle', default=True, description='Build with libbeagle support')
depends_on('java', type='run')
depends_on('libbeagle', type=('build', 'link', 'run'), when="+beagle")
def url_for_version(self, ver):
base = 'https://github.com/beast-dev/beast-mcmc/releases/download'
return '{0}/v{1}/BEASTv{1}.tgz'.format(base, ver.dotted)
def setup_environment(self, spack_env, run_env):
run_env.set('BEAST1', self.prefix)
def install(self, spec, prefix):
install_tree('bin', prefix.bin)
install_tree('examples', prefix.examples)
install_tree('images', prefix.images)
install_tree('lib', prefix.lib)
install_tree('doc', prefix.doc)
|
