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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Bioawk(MakefilePackage):
"""Bioawk is an extension to Brian Kernighan's awk, adding the support of
several common biological data formats, including optionally gzip'ed
BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.
"""
homepage = "https://github.com/lh3/bioawk"
url = "https://github.com/lh3/bioawk/archive/v1.0.zip"
version("1.0", sha256="316a6561dda41e8327b85106db3704e94e23d7a89870392d19ef8559f7859e2d")
depends_on("zlib-api")
depends_on("bison", type=("build"))
parallel = False
def build(self, spec, prefix):
make("CC={0}".format(spack_cc))
def install(self, spec, prefix):
mkdirp(prefix.bin)
install("bioawk", prefix.bin)
install("maketab", prefix.bin)
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