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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import archspec
from spack.package import *
class Blast2go(Package):
"""Blast2GO is a bioinformatics platform for high-quality functional
annotation and analysis of genomic datasets."""
homepage = "https://www.blast2go.com/"
version("5.2.5", sha256="c37aeda25f96ac0553b52da6b5af3167d50671ddbfb3b39bcb11afe5d0643891")
for t in set(
[str(x.family) for x in archspec.cpu.TARGETS.values() if str(x.family) != "x86_64"]
):
conflicts("target={0}:".format(t), msg="blast2go is available x86_64 only")
depends_on("bash", type="build")
depends_on("blast-plus", type="run")
depends_on("java", type="build")
def url_for_version(self, version):
fname = "Blast2GO_unix_{0}.zip".format(version.underscored)
return "http://resources.biobam.com/software/blast2go/nico/%s" % fname
def install(self, spec, prefix):
# blast2go install script prompts for the following:
#
# continue? [o/c] => o
# installation prefix => prefix
# desktop icon [y/n] => n
# run blast2go? [y/n] => n
config_input_file = "spack-config.in"
config_input_data = ["o\n", prefix.bin + "\n", "n\n", "n\n"]
with open(config_input_file, "w") as f:
f.writelines(config_input_data)
with open(config_input_file, "r") as f:
bash = which("bash")
bash("Blast2GO_unix_%s.sh" % self.version.underscored, input=f)
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