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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import archspec
from spack import *
class Blast2go(Package):
"""Blast2GO is a bioinformatics platform for high-quality functional
annotation and analysis of genomic datasets."""
homepage = "https://www.blast2go.com/"
version('5.2.5', sha256='c37aeda25f96ac0553b52da6b5af3167d50671ddbfb3b39bcb11afe5d0643891')
for t in set([str(x.family) for x in archspec.cpu.TARGETS.values()
if str(x.family) != 'x86_64']):
conflicts('target={0}:'.format(t), msg='blast2go is available x86_64 only')
depends_on('bash', type='build')
depends_on('blast-plus', type='run')
depends_on('java', type='build')
def url_for_version(self, version):
fname = 'Blast2GO_unix_{0}.zip'.format(version.underscored)
return 'http://resources.biobam.com/software/blast2go/nico/%s' % fname
def install(self, spec, prefix):
# blast2go install script prompts for the following:
#
# continue? [o/c] => o
# installation prefix => prefix
# desktop icon [y/n] => n
# run blast2go? [y/n] => n
config_input_file = 'spack-config.in'
config_input_data = [
'o\n',
prefix.bin + '\n',
'n\n',
'n\n',
]
with open(config_input_file, 'w') as f:
f.writelines(config_input_data)
with open(config_input_file, 'r') as f:
bash = which('bash')
bash('Blast2GO_unix_%s.sh' % self.version.underscored, input=f)
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