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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Butter(Package):
"""butter: Bowtie UTilizing iTerative placEment of Repetitive small rnas.
A wrapper for bowtie to produce small RNA-seq alignments where
multimapped small RNAs tend to be placed near regions of confidently
high density."""
homepage = "https://github.com/MikeAxtell/butter"
url = "https://github.com/MikeAxtell/butter/archive/v0.3.3.tar.gz"
version("0.3.3", sha256="862cbe06d51fdefca18e5fe4cfa8e4df6ce92686ccbc389affe05b199ea9243b")
depends_on("perl", type=("build", "run"))
depends_on("samtools")
depends_on("bowtie")
def install(self, spec, prefix):
mkdirp(prefix.bin)
install("butter", prefix.bin)
install("bam2wig", prefix.bin)
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