blob: 36ce449ce99660522c2389eb3514df86db16e6a8 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
from spack.pkg.builtin.boost import Boost
class Casper(MakefilePackage):
"""CASPER (Context-Aware Scheme for Paired-End Read) is state-of-the art
merging tool in terms of accuracy and robustness. Using this
sophisticated merging method, we could get elongated reads from the
forward and reverse reads."""
homepage = "http://best.snu.ac.kr/casper/index.php?name=main"
url = "http://best.snu.ac.kr/casper/program/casper_v0.8.2.tar.gz"
version('0.8.2', sha256='3005e165cebf8ce4e12815b7660a833e0733441b5c7e5ecbfdccef7414b0c914')
depends_on('jellyfish@2.2.3:')
# TODO: replace this with an explicit list of components of Boost,
# for instance depends_on('boost +filesystem')
# See https://github.com/spack/spack/pull/22303 for reference
depends_on(Boost.with_default_variants)
conflicts('%gcc@7.1.0')
def install(self, spec, prefix):
install_tree('.', prefix)
def setup_run_environment(self, env):
env.prepend_path('PATH', self.spec.prefix)
|
