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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from collections import defaultdict
from spack.package import *
from spack.util.environment import is_system_path
class Cdo(AutotoolsPackage):
"""CDO is a collection of command line Operators to manipulate and analyse
Climate and NWP model Data.
"""
homepage = "https://code.mpimet.mpg.de/projects/cdo"
url = "https://code.mpimet.mpg.de/attachments/download/12760/cdo-1.7.2.tar.gz"
list_url = "https://code.mpimet.mpg.de/projects/cdo/files"
maintainers("skosukhin", "Try2Code")
version(
"2.3.0",
sha256="10c878227baf718a6917837527d4426c2d0022cfac4457c65155b9c57f091f6b",
url="https://code.mpimet.mpg.de/attachments/download/29019/cdo-2.3.0.tar.gz",
)
version(
"2.2.2",
sha256="419c77315244019af41a296c05066f474cccbf94debfaae9e2106da51bc7c937",
url="https://code.mpimet.mpg.de/attachments/download/28882/cdo-2.2.2.tar.gz",
)
version(
"2.2.0",
sha256="679c8d105706caffcba0960ec5ddc4a1332c1b40c52f82c3937356999d8fadf2",
url="https://code.mpimet.mpg.de/attachments/download/28013/cdo-2.2.0.tar.gz",
)
version(
"2.1.1",
sha256="c29d084ccbda931d71198409fb2d14f99930db6e7a3654b3c0243ceb304755d9",
url="https://code.mpimet.mpg.de/attachments/download/27654/cdo-2.1.1.tar.gz",
)
version(
"2.1.0",
sha256="b871346c944b05566ab21893827c74616575deaad0b20eacb472b80b1fa528cc",
url="https://code.mpimet.mpg.de/attachments/download/27481/cdo-2.1.0.tar.gz",
)
version(
"2.0.6",
sha256="ef120dea9032b1be80a4cfa201958c3b910107205beb6674195675f1ee8ed402",
url="https://code.mpimet.mpg.de/attachments/download/27276/cdo-2.0.6.tar.gz",
)
version(
"2.0.5",
sha256="edeebbf1c3b1a1f0c642dae6bc8c7624e0c54babe461064dc5c7daca4a5b0dce",
url="https://code.mpimet.mpg.de/attachments/download/26823/cdo-2.0.5.tar.gz",
)
version(
"2.0.4",
sha256="73c0c1e5348632e6e8452ea8e617c35499bc55c845ee2c1d42b912a7e00e5533",
url="https://code.mpimet.mpg.de/attachments/download/26761/cdo-2.0.4.tar.gz",
)
version(
"2.0.3",
sha256="25520260ccb4e5324c27fa2160dfafc8152b180dd7f0133bd80425df3ef7c65a",
url="https://code.mpimet.mpg.de/attachments/download/26676/cdo-2.0.3.tar.gz",
)
version(
"2.0.2",
sha256="34dfdd0d4126cfd35fc69e37e60901c8622d13ec5b3fa5f0fe6a1cc866cc5a70",
url="https://code.mpimet.mpg.de/attachments/download/26654/cdo-2.0.2.tar.gz",
)
version(
"2.0.1",
sha256="d0794d261e22efa0adac8e6d18de2b60d54de5e1a4df6127c65fc417feb8fdac",
url="https://code.mpimet.mpg.de/attachments/download/26477/cdo-2.0.1.tar.gz",
)
version(
"2.0.0",
sha256="6bca54e9d69d8c1f072f1996547b7347a65743d15ba751967e9bb16e0ff7a843",
url="https://code.mpimet.mpg.de/attachments/download/26370/cdo-2.0.0.tar.gz",
)
version(
"1.9.10",
sha256="cc39c89bbb481d7b3945a06c56a8492047235f46ac363c4f0d980fccdde6677e",
url="https://code.mpimet.mpg.de/attachments/download/24638/cdo-1.9.10.tar.gz",
)
version(
"1.9.9",
sha256="959b5b58f495d521a7fd1daa84644888ec87d6a0df43f22ad950d17aee5ba98d",
url="https://code.mpimet.mpg.de/attachments/download/23323/cdo-1.9.9.tar.gz",
)
version(
"1.9.8",
sha256="f2660ac6f8bf3fa071cf2a3a196b3ec75ad007deb3a782455e80f28680c5252a",
url="https://code.mpimet.mpg.de/attachments/download/20826/cdo-1.9.8.tar.gz",
)
version(
"1.9.7.1",
sha256="3771952e065bcf935d43e492707370ed2a0ecb59a06bea24f9ab69d77943962c",
url="https://code.mpimet.mpg.de/attachments/download/20124/cdo-1.9.7.1.tar.gz",
)
version(
"1.9.6",
sha256="b31474c94548d21393758caa33f35cf7f423d5dfc84562ad80a2bdcb725b5585",
url="https://code.mpimet.mpg.de/attachments/download/19299/cdo-1.9.6.tar.gz",
)
version(
"1.9.5",
sha256="48ed65cc5b436753c8e7f9eadd8aa97376698ce230ceafed2a4350a5b1a27148",
url="https://code.mpimet.mpg.de/attachments/download/18264/cdo-1.9.5.tar.gz",
)
version(
"1.9.4",
sha256="3d1c0fd3f7d38c5d3d88139ca1546c9d24e1b1ff752a794a4194dfe624695def",
url="https://code.mpimet.mpg.de/attachments/download/17374/cdo-1.9.4.tar.gz",
)
version(
"1.9.3",
sha256="e83a3de7b402600c0d9a5df18073d36d133ff9719d3c561a0efa90f9c1599f3f",
url="https://code.mpimet.mpg.de/attachments/download/16435/cdo-1.9.3.tar.gz",
)
version(
"1.9.2",
sha256="d1c5092167034a48e4b8ada24cf78a1d4b84e364ffbb08b9ca70d13f428f300c",
url="https://code.mpimet.mpg.de/attachments/download/16035/cdo-1.9.2.tar.gz",
)
version(
"1.9.1",
sha256="33cba3cfcc27e5896769143c5f8e2f300ca14c7a40d1f19ffd1ed24b49ea3d55",
url="https://code.mpimet.mpg.de/attachments/download/15653/cdo-1.9.1.tar.gz",
)
version(
"1.9.0",
sha256="df367f8c3abf4ab085bcfc61e0205b28a5ecc69b7b83ba398b4d3c874dd69008",
url="https://code.mpimet.mpg.de/attachments/download/15187/cdo-1.9.0.tar.gz",
)
version(
"1.8.2",
sha256="6ca6c1263af2237737728ac937a275f8aa27680507636a6b6320f347c69a369a",
url="https://code.mpimet.mpg.de/attachments/download/14686/cdo-1.8.2.tar.gz",
)
version(
"1.7.2",
sha256="4c43eba7a95f77457bfe0d30fb82382b3b5f2b0cf90aca6f0f0a008f6cc7e697",
url="https://code.mpimet.mpg.de/attachments/download/12760/cdo-1.7.2.tar.gz",
)
variant("netcdf", default=True, description="Enable NetCDF support")
variant(
"grib2",
default="eccodes",
values=("eccodes", "grib-api", "none"),
description="Specify GRIB2 backend",
)
variant(
"external-grib1",
default=False,
description="Ignore the built-in support and use the external "
"GRIB2 backend for GRIB1 files",
)
variant("szip", default=True, description="Enable szip compression for GRIB1")
variant("hdf5", default=True, description="Enable HDF5 support")
variant("udunits2", default=True, description="Enable UDUNITS2 support")
variant("libxml2", default=True, description="Enable libxml2 support")
variant("proj", default=True, description="Enable PROJ library for cartographic projections")
variant("curl", default=False, description="Enable curl support")
variant("fftw3", default=True, description="Enable support for fftw3")
variant("magics", default=False, description="Enable Magics library support")
variant("openmp", default=True, description="Enable OpenMP support")
depends_on("pkgconfig", type="build")
depends_on("netcdf-c", when="+netcdf")
# The internal library of CDO implicitly links to hdf5.
# We also need the backend of netcdf to be thread safe.
depends_on("hdf5+threadsafe", when="+netcdf")
# Same in case hdf5 is used in the frontend
depends_on("hdf5+threadsafe", when="+hdf5")
depends_on("grib-api", when="grib2=grib-api")
depends_on("eccodes", when="grib2=eccodes")
depends_on("szip", when="+szip")
depends_on("udunits", when="+udunits2")
depends_on("libxml2", when="+libxml2")
depends_on("proj@:5", when="@:1.9.6+proj")
depends_on("proj@:7", when="@1.9.7+proj")
depends_on("proj@5:", when="@1.9.8:+proj")
depends_on("curl", when="+curl")
depends_on("fftw-api@3:", when="+fftw3")
depends_on("magics", when="+magics")
depends_on("uuid")
conflicts(
"+szip", when="+external-grib1 grib2=none", msg="The configuration does not support GRIB1"
)
conflicts("%gcc@9:", when="@:1.9.6", msg="GCC 9 changed OpenMP data sharing behavior")
def configure_args(self):
config_args = []
flags = defaultdict(list)
def yes_or_prefix(spec_name):
prefix = self.spec[spec_name].prefix
return "yes" if is_system_path(prefix) else prefix
if "+netcdf" in self.spec:
config_args.append("--with-netcdf=" + yes_or_prefix("netcdf-c"))
# We need to make sure that the libtool script of libcdi - the
# internal library of CDO - finds the correct version of hdf5.
# Note that the argument of --with-hdf5 is not passed to the
# configure script of libcdi, therefore we have to provide
# additional flags regardless of whether hdf5 support is enabled.
hdf5_spec = self.spec["hdf5"]
if not is_system_path(hdf5_spec.prefix):
flags["LDFLAGS"].append(self.spec["hdf5"].libs.search_flags)
else:
config_args.append("--without-netcdf")
if self.spec.variants["grib2"].value == "eccodes":
if self.spec.satisfies("@1.9:"):
config_args.append("--with-eccodes=" + yes_or_prefix("eccodes"))
config_args.append("--without-grib_api")
else:
config_args.append("--with-grib_api=yes")
eccodes_spec = self.spec["eccodes"]
eccodes_libs = eccodes_spec.libs
flags["LIBS"].append(eccodes_libs.link_flags)
if not is_system_path(eccodes_spec.prefix):
flags["LDFLAGS"].append(eccodes_libs.search_flags)
elif self.spec.variants["grib2"].value == "grib-api":
config_args.append("--with-grib_api=" + yes_or_prefix("grib-api"))
if self.spec.satisfies("@1.9:"):
config_args.append("--without-eccodes")
else:
config_args.append("--without-grib_api")
if self.spec.satisfies("@1.9:"):
config_args.append("--without-eccodes")
if "+external-grib1" in self.spec:
config_args.append("--disable-cgribex")
else:
config_args.append("--enable-cgribex")
if "+szip" in self.spec:
config_args.append("--with-szlib=" + yes_or_prefix("szip"))
else:
config_args.append("--without-szlib")
config_args += self.with_or_without("hdf5", activation_value=yes_or_prefix)
config_args += self.with_or_without(
"udunits2", activation_value=lambda x: yes_or_prefix("udunits")
)
if "+libxml2" in self.spec:
libxml2_spec = self.spec["libxml2"]
if is_system_path(libxml2_spec.prefix):
config_args.append("--with-libxml2=yes")
# Spack does not inject the header search flag in this case,
# which is still required, unless libxml2 is installed to '/usr'
# (handled by the configure script of CDO).
if libxml2_spec.prefix != "/usr":
flags["CPPFLAGS"].append(libxml2_spec.headers.include_flags)
else:
config_args.append("--with-libxml2=" + libxml2_spec.prefix)
else:
config_args.append("--without-libxml2")
config_args += self.with_or_without("proj", activation_value=yes_or_prefix)
config_args += self.with_or_without("curl", activation_value=yes_or_prefix)
config_args += self.with_or_without("magics", activation_value=yes_or_prefix)
config_args += self.with_or_without("fftw3")
config_args += self.enable_or_disable("openmp")
# Starting version 1.9.0 CDO is a C++ program but it uses the C
# interface of HDF5 without the parallel features. To avoid
# unnecessary dependencies on mpi's cxx library, we need to set the
# following flags. This works for OpenMPI, MPICH, MVAPICH, Intel MPI,
# IBM Spectrum MPI, bullx MPI, and Cray MPI.
if self.spec.satisfies("@1.9:+hdf5^hdf5+mpi"):
flags["CPPFLAGS"].append("-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX")
config_args.extend(["{0}={1}".format(var, " ".join(val)) for var, val in flags.items()])
return config_args
|
