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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Cleaveland4(Package):
"""CleaveLand4: Analysis of degradome data to find sliced miRNA and siRNA
targets"""
homepage = "https://github.com/MikeAxtell/CleaveLand4"
url = "https://github.com/MikeAxtell/CleaveLand4/archive/v4.4.tar.gz"
version('4.4', 'cf62a1de715a612fc8bd5a62364e69db')
depends_on('perl', type=('build', 'run'))
depends_on('perl-math-cdf', type=('build', 'run'))
depends_on('bowtie')
depends_on('viennarna')
depends_on('r', type=('build', 'run'))
depends_on('samtools')
def install(self, spec, prefix):
mkdirp(prefix.bin)
install('CleaveLand4.pl', prefix.bin)
with working_dir('GSTAr_v1-0'):
install('GSTAr.pl', prefix.bin)
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