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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Ctffind(AutotoolsPackage):
"""Fast and accurate defocus estimation from electron micrographs."""
homepage = "https://grigoriefflab.umassmed.edu/ctffind4"
url = "https://grigoriefflab.umassmed.edu/system/tdf?path=ctffind-4.1.8.tar.gz&file=1&type=node&id=26"
license("BSD-3-Clause")
version(
"4.1.14",
sha256="db17b2ebeb3c3b2b3764e42b820cd50d19ccccf6956c64257bfe5d5ba6b40cb5",
extension="tar.gz",
)
version(
"4.1.8",
sha256="bec43c0b8d32878c740d6284ef6d9d22718c80dc62270be18d1d44e8b84b2729",
extension="tar.gz",
)
def url_for_version(self, version):
url = "https://grigoriefflab.umassmed.edu/system/tdf?path=ctffind-{0}.tar.gz&file=1&type=node&id=26"
return url.format(version)
depends_on("wxwidgets")
depends_on("fftw-api")
depends_on("libtiff")
depends_on("jpeg")
patch("configure.patch", when="@4.1.8")
patch("no_sincos_asm.patch", when="@4.1.14 target=power9le")
patch("no_sincos_asm.patch", when="@4.1.14 target=aarch64:")
patch("fix_return_types.patch", when="@4.1.13:4.1.14")
def configure_args(self):
config_args = []
if self.spec["fftw-api"].name in INTEL_MATH_LIBRARIES:
config_args.extend(
[
"--enable-mkl",
"CPPFLAGS=-I{0}".format(
join_path(self.spec["fftw-api"].headers.directories[0], "fftw")
),
]
)
else:
config_args.extend(
[
"--disable-mkl",
"CPPFLAGS={0}".format(self.spec["fftw-api"].headers.include_flags),
]
)
return config_args
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