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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Denovogear(CMakePackage):
"""DeNovoGear is a software package to detect de novo mutations using
next-generation sequencing data. It supports the analysis of many
differential experimental designs and uses advanced statistical models
to reduce the false positve rate."""
homepage = "https://github.com/denovogear/denovogear"
url = "https://github.com/denovogear/denovogear/archive/v1.1.1.tar.gz"
license("GPL-3.0-or-later")
version("1.1.1", sha256="799fe99193e9cf12320893cf020a3251022f60a49de8677a1c5a18c578fe4be2")
version("1.1.0", sha256="f818f80cd67183294c8aae312cad8311e6a9abede1f687567bb079d29f79c005")
depends_on("cmake@3.1:", type=("build"))
depends_on(
"boost@1.47:1.60"
"+exception+filesystem+system+serialization+graph+iostreams+regex+math+container",
type="build",
)
depends_on("htslib@1.2:", type=("build"))
depends_on("eigen", type=("build"))
depends_on("zlib-api", type=("link"))
patch("stream-open.patch", when="@:1.1.1")
# fix: ordered comparison between pointer and zero.
patch("newmat6.cpp.patch")
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