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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class DialignTx(MakefilePackage):
"""DIALIGN-TX: greedy and progressive approaches for segment-based
multiple sequence alignment"""
homepage = "https://dialign-tx.gobics.de/"
url = "https://dialign-tx.gobics.de/DIALIGN-TX_1.0.2.tar.gz"
license("LGPL-2.1-or-later")
version("1.0.2", sha256="fb3940a48a12875332752a298f619f0da62593189cd257d28932463c7cebcb8f")
build_directory = "source"
conflicts("%gcc@6:")
def edit(self, spec, prefix):
with working_dir(self.build_directory):
makefile = FileFilter("Makefile")
makefile.filter(" -march=i686 ", " ")
makefile.filter("CC=gcc", "CC=%s" % spack_cc)
if spec.target.family == "aarch64":
makefile.filter("-mfpmath=sse -msse -mmmx", " ")
def install(self, spec, prefix):
mkdirp(prefix.bin)
with working_dir(self.build_directory):
install("dialign-tx", prefix.bin)
# t-coffee recognizes as dialign-t
install("dialign-tx", join_path(prefix.bin, "dialign-t"))
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