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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class DialignTx(MakefilePackage):
"""DIALIGN-TX: greedy and progressive approaches for segment-based
multiple sequence alignment"""
homepage = "https://dialign-tx.gobics.de/"
url = "http://dialign-tx.gobics.de/DIALIGN-TX_1.0.2.tar.gz"
version('1.0.2', sha256='fb3940a48a12875332752a298f619f0da62593189cd257d28932463c7cebcb8f')
build_directory = 'source'
conflicts('%gcc@6:')
def edit(self, spec, prefix):
with working_dir(self.build_directory):
makefile = FileFilter('Makefile')
makefile.filter(' -march=i686 ', ' ')
makefile.filter('CC=gcc', 'CC=%s' % spack_cc)
if spec.target.family == 'aarch64':
makefile.filter('-mfpmath=sse -msse -mmmx', ' ')
def install(self, spec, prefix):
mkdirp(prefix.bin)
with working_dir(self.build_directory):
install('dialign-tx', prefix.bin)
# t-coffee recognizes as dialign-t
install('dialign-tx', join_path(prefix.bin, 'dialign-t'))
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