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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class EaUtils(MakefilePackage):
"""Command-line tools for processing biological sequencing data. Barcode
demultiplexing, adapter trimming, etc. Primarily written to support an
Illumina based pipeline - but should work with any FASTQs."""
homepage = "http://expressionanalysis.github.io/ea-utils/"
url = "https://github.com/ExpressionAnalysis/ea-utils/archive/1.04.807.tar.gz"
version('1.04.807', sha256='aa09d25e6aa7ae71d2ce4198a98e58d563f151f8ff248e4602fa437f12b8d05f')
depends_on('subversion')
depends_on('zlib')
depends_on('gsl')
depends_on('bamtools')
# perl module required for make check, which is included in the default
# target
depends_on('perl', type='build')
build_directory = 'clipper'
def edit(self, spec, prefix):
with working_dir('clipper'):
makefile = FileFilter('Makefile')
makefile.filter('/usr', prefix)
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