1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
|
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Eem(MakefilePackage):
"""EEM is a program to extract the gene group and expression modules
that are co-expressed in the mRNA expression data."""
homepage = "http://www.scls.riken.jp/scruise/software/eem.html"
url = "http://www.scls.riken.jp/wp-content/uploads/2014/07/eemParallel_1.0.1.tar.gz"
version("1.0.1", sha256="f617ea7350fce3b2581c814f70bda4427cbab83aac54a2dcadb36e8193f300bb")
variant("K", default=False, description="Build for K computer")
depends_on("mpi")
build_directory = "src"
patch("add_include.patch")
def edit(self, spec, prefix):
settings = FileFilter("./src/local_settings.mk")
settings.filter("$(HOME)/local", prefix, string=True)
settings.filter("mpicxx", self.spec["mpi"].mpicxx, string=True)
if "+K" in self.spec:
settings.filter("CXXFLAGS= -Wall -Wno-sign-compare -g", "CXXFLAGS=", string=True)
settings.filter(
"CXXFLAGS+= -std=c++11 -DHAVE_UNORDERED_MAP",
"CXXFLAGS+= -DHAVE_UNORDERED_MAP",
string=True,
)
settings.filter("CXXFLAGS+= -DHAVE_SHUFFLE", "#CXXFLAGS+= -DHAVE_SHUFFLE", string=True)
|
