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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Eem(MakefilePackage):
"""EEM is a program to extract the gene group and expression modules
that are co-expressed in the mRNA expression data."""
homepage = "http://www.scls.riken.jp/scruise/software/eem.html"
url = "http://www.scls.riken.jp/wp-content/uploads/2014/07/eemParallel_1.0.1.tar.gz"
version('1.0.1', sha256='f617ea7350fce3b2581c814f70bda4427cbab83aac54a2dcadb36e8193f300bb')
variant('K', default=False, description='Build for K computer')
phases = ['edit', 'install']
depends_on('mpi')
build_directory = 'src'
patch('add_include.patch')
def edit(self, spec, prefix):
settings = FileFilter('./src/local_settings.mk')
settings.filter('$(HOME)/local', prefix, string=True)
settings.filter('mpicxx', self.spec['mpi'].mpicxx, string=True)
if '+K' in self.spec:
settings.filter('CXXFLAGS= -Wall -Wno-sign-compare -g',
'CXXFLAGS=', string=True)
settings.filter('CXXFLAGS+= -std=c++11 -DHAVE_UNORDERED_MAP',
'CXXFLAGS+= -DHAVE_UNORDERED_MAP', string=True)
settings.filter('CXXFLAGS+= -DHAVE_SHUFFLE',
'#CXXFLAGS+= -DHAVE_SHUFFLE', string=True)
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