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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Exabayes(AutotoolsPackage):
"""ExaBayes is a software package for Bayesian tree inference. It is
particularly suitable for large-scale analyses on computer clusters."""
homepage = "https://sco.h-its.org/exelixis/web/software/exabayes/"
url = "https://sco.h-its.org/exelixis/resource/download/software/exabayes-1.5.tar.gz"
license("GPL-3.0-only")
version("1.5.1", sha256="f75ce8d5cee4d241cadacd0f5f5612d783b9e9babff2a99c7e0c3819a94bbca9")
version("1.5", sha256="e401f1b4645e67e8879d296807131d0ab79bba81a1cd5afea14d7c3838b095a2")
variant("mpi", default=True, description="Enable MPI parallel support")
depends_on("mpi", when="+mpi")
# ExaBayes manual states the program succesfully compiles with GCC, version
# 4.6 or greater, and Clang, version 3.2 or greater. The build fails when
# GCC 7.1.0 is used.
conflicts("%gcc@:4.5.4, 7.1.0:", when="@:1.5.0")
conflicts("%clang@:3.1")
conflicts("^intel-mpi", when="+mpi")
conflicts("^intel-parallel-studio+mpi", when="+mpi")
conflicts("^mvapich2", when="+mpi")
conflicts("^spectrum-mpi", when="+mpi")
def configure_args(self):
args = []
if "+mpi" in self.spec:
args.append("--enable-mpi")
else:
args.append("--disable-mpi")
return args
def flag_handler(self, name, flags):
if name.lower() == "cxxflags":
# manual cites need for c++11
flags.append(self.compiler.cxx11_flag)
return (flags, None, None)
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