1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
|
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Examl(MakefilePackage):
"""
Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
using MPI. This code implements the popular RAxML search algorithm
for maximum likelihood based inference of phylogenetic trees.
"""
homepage = "https://github.com/stamatak/ExaML"
url = "https://github.com/stamatak/ExaML/archive/v3.0.22.tar.gz"
maintainers("robqiao")
license("GPL-3.0-only")
version("3.0.22", sha256="802e673b0c2ea83fdbe6b060048d83f22b6978933a04be64fb9b4334fe318ca3")
version("3.0.21", sha256="6c7e6c5d7bf4ab5cfbac5cc0d577885272a803c142e06b531693a6a589102e2e")
version("3.0.20", sha256="023681248bbc7f19821b509948d79301e46bbf275aa90bf12e9f4879639a023b")
version("3.0.19", sha256="3814230bf7578b8396731dc87ce665d0b1a671d8effd571f924c5b7936ae1c9e")
version("3.0.18", sha256="1bacb5124d943d921e7beae52b7062626d0ce3cf2f83e3aa3acf6ea26cf9cd87")
version("3.0.17", sha256="90a859e0b8fff697722352253e748f03c57b78ec5fbc1ae72f7e702d299dac67")
version("3.0.16", sha256="abc922994332d40892e30f077e4644db08cd59662da8e2a9197d1bd8bcb9aa5f")
version("3.0.15", sha256="da5e66a63d6fa34b640535c359d8daf67f23bd2fcc958ac604551082567906b0")
version("3.0.14", sha256="698b538996946ae23a2d6fa1e230c210832e59080da33679ff7d6b342a9e6180")
version("3.0.13", sha256="893aecb5545798235a17975aa07268693d3526d0aee0ed59a2d6e791248791ed")
variant("mpi", default=True, description="Enable MPI parallel support")
depends_on("mpi", when="+mpi")
def build(self, spec, prefix):
#####################
# Build Directories #
#####################
with working_dir("examl"):
make("-f", "Makefile.SSE3.gcc")
with working_dir("parser"):
make("-f", "Makefile.SSE3.gcc")
def install(self, spec, prefix):
mkdirp(prefix.bin)
install("examl/examl", prefix.bin)
install("parser/parse-examl", prefix.bin)
install_tree("manual", prefix.manual)
install_tree("testData", prefix.testData)
|
