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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Falcon(PythonPackage):
"""Falcon: a set of tools for fast aligning long reads for consensus
and assembly.
The Falcon tool kit is a set of simple code collection which I use
for studying efficient assembly algorithm for haploid and diploid genomes.
It has some back-end code implemented in C for speed and some simple
front-end written in Python for convenience."""
homepage = "https://github.com/PacificBiosciences/FALCON"
git = "https://github.com/PacificBiosciences/FALCON.git"
version("2017-05-30", commit="86cec6157291679095ea6080b0cde6561eccc041")
depends_on("py-setuptools", type="run")
depends_on("py-pypeflow", type="run")
depends_on("py-networkx@1.7:1.10", type=["build", "run"])
depends_on("pacbio-dazz-db", type="run")
depends_on("pacbio-daligner", type="run")
depends_on("pacbio-dextractor", type="run")
depends_on("pacbio-damasker", type="run")
# Python version 3 and later should return
# a value of PyObject type. [-Wreturn-type]
patch("Py_None.patch", when="^python@3:")
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