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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Fastqvalidator(MakefilePackage):
"""The fastQValidator validates the format of fastq files."""
homepage = "https://genome.sph.umich.edu/wiki/FastQValidator"
git = "https://github.com/statgen/fastQValidator.git"
version('2017-01-10', commit='6d619a34749e9d33c34ef0d3e0e87324ca77f320')
resource(
name='libStatGen',
git='https://github.com/statgen/libStatGen.git',
commit='9db9c23e176a6ce6f421a3c21ccadedca892ac0c'
)
depends_on('zlib', type='link')
patch('chromosome.patch', when='@2017-01-10', working_dir='libStatGen')
@property
def build_targets(self):
return ['LIB_PATH_GENERAL={0}'.format(
join_path(self.stage.source_path, 'libStatGen'))]
@property
def install_targets(self):
return [
'INSTALLDIR={0}'.format(self.prefix.bin),
'LIB_PATH_GENERAL={0}'.format(
join_path(self.stage.source_path, 'libStatGen')),
'install'
]
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