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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
from spack.pkg.builtin.boost import Boost
class Fenics(CMakePackage):
"""FEniCS is organized as a collection of interoperable components
that together form the FEniCS Project. These components include
the problem-solving environment DOLFIN, the form compiler FFC, the
finite element tabulator FIAT, the just-in-time compiler Instant / Dijitso,
the code generation interface UFC, the form language UFL and a range of
additional components."""
homepage = "https://fenicsproject.org/"
git = "https://bitbucket.org/fenics-project/dolfin.git"
url = "https://bitbucket.org/fenics-project/dolfin/downloads/dolfin-2019.1.0.post0.tar.gz"
license("LGPL-3.0-only")
version(
"2019.1.0.post0", sha256="61abdcdb13684ba2a3ba4afb7ea6c7907aa0896a46439d3af7e8848483d4392f"
)
version(
"2018.1.0.post1", sha256="425cc49b90e0f5c2ebdd765ba9934b1ada97e2ac2710d982d6d267a5e2c5982d"
)
# Pre 2018.1.0 versions are deprecated due to expected compatibility issues
version(
"2017.2.0.post0",
sha256="d3c40cd8c1c882f517999c25ea4220adcd01dbb1d829406fce99b1fc40184c82",
deprecated=True,
)
version(
"2016.2.0",
sha256="c6760996660a476f77889e11e4a0bc117cc774be0eec777b02a7f01d9ce7f43d",
deprecated=True,
)
dolfin_versions = ["2019.1.0", "2018.1.0", "2017.2.0", "2016.2.0"]
variant("python", default=True, description="Compile with Python interface")
variant("hdf5", default=True, description="Compile with HDF5")
variant("parmetis", default=True, description="Compile with ParMETIS")
variant("scotch", default=True, description="Compile with Scotch")
variant("petsc", default=True, description="Compile with PETSc")
variant("slepc", default=True, description="Compile with SLEPc")
variant("petsc4py", default=True, description="Use PETSC4py")
variant("slepc4py", default=True, description="Use SLEPc4py")
variant("trilinos", default=False, description="Compile with Trilinos")
variant("suite-sparse", default=True, description="Compile with SuiteSparse solvers")
variant("vtk", default=False, description="Compile with VTK")
variant("qt", default=False, description="Compile with QT")
variant("zlib", default=False, description="Compile with ZLIB")
variant("mpi", default=True, description="Enables the distributed memory support")
variant("openmp", default=True, description="Enables the shared memory support")
variant("shared", default=True, description="Enables the build of shared libraries")
variant("doc", default=False, description="Builds the documentation")
variant(
"build_type",
default="RelWithDebInfo",
description="The build type to build",
values=("Debug", "Release", "RelWithDebInfo", "MinSizeRel", "Developer"),
)
# Conflics for PETSC4PY / SLEPC4PY
conflicts("+petsc4py", when="~python")
conflicts("+petsc4py", when="~petsc")
conflicts("+slepc4py", when="~python")
conflicts("+slepc4py", when="~slepc")
# Patches
# patch('petsc-3.7.patch', when='petsc@3.7:')
patch("header_fix.patch", when="@2019.1.0.post0")
# endian.hpp for byte order detection was removed with Boost 1.73,
# use __BYTE_ORDER__ instead
patch(
"https://bitbucket.org/fenics-project/dolfin/issues/attachments/1116/fenics-project/dolfin/1602778118.04/1116/0001-Use-__BYTE_ORDER__-instead-of-removed-Boost-endian.h.patch",
sha256="1cc69e612df18feb5ebdc78cd902cfefda5ffc077735f0b67a1dcb1bf82e63c9",
when="@2019.1.0.post0",
)
patch("petsc_3_11.patch", when="@2018.1.0.post1")
# enable extension support for fenics package
extends("python", when="+python")
# fenics python package dependencies
for ver in dolfin_versions:
wver = "@" + ver
depends_on("py-fenics-fiat{0}".format(wver), type=("build", "run"), when=wver + "+python")
if Version(ver) < Version("2018.1.0"):
depends_on(
"py-fenics-instant{0}".format(wver), type=("build", "run"), when=wver + "+python"
)
else:
depends_on(
"py-fenics-dijitso{0}".format(wver), type=("build", "run"), when=wver + "+python"
)
depends_on("py-fenics-ufl{0}".format(wver), type=("build", "run"), when=wver + "+python")
if ver in ["2019.1.0", "2017.2.0"]:
wver = "@" + ver + ".post0"
depends_on("py-fenics-ffc{0}".format(wver), type=("build", "run"), when=wver + "+python")
# package dependencies
depends_on("python@3.5:", type=("build", "run"), when="+python")
depends_on("eigen@3.2.0:")
depends_on("pkgconfig", type="build")
depends_on("zlib-api", when="+zlib")
depends_on("boost+filesystem+program_options+system+iostreams+timer+regex+chrono")
depends_on(
"boost+filesystem+program_options+system+iostreams+timer+regex+chrono@1.68.0",
when="@:2018",
)
# TODO: replace this with an explicit list of components of Boost,
# for instance depends_on('boost +filesystem')
# See https://github.com/spack/spack/pull/22303 for reference
depends_on(Boost.with_default_variants)
depends_on("mpi", when="+mpi")
depends_on("hdf5@:1.10+hl+fortran", when="+hdf5+petsc")
depends_on("hdf5@:1.10+hl", when="+hdf5~petsc")
depends_on("metis+real64", when="+parmetis")
depends_on("parmetis", when="+parmetis")
depends_on("scotch~metis", when="+scotch~mpi")
depends_on("scotch+mpi~metis", when="+scotch+mpi")
depends_on("petsc", when="+petsc")
depends_on("slepc", when="+slepc")
depends_on("py-petsc4py@3.6:", when="+petsc+python")
depends_on("trilinos", when="+trilinos")
depends_on("vtk", when="+vtk")
depends_on("suite-sparse", when="+suite-sparse")
depends_on("qt", when="+qt")
depends_on("py-pybind11@2.2.4", type=("build", "run"))
depends_on("cmake@3.17.3:", type="build")
depends_on("py-pip", when="+python", type="build")
depends_on("py-wheel", when="+python", type="build")
depends_on("py-setuptools", type="build", when="+python")
depends_on("py-pkgconfig", type=("build", "run"), when="+python")
depends_on("py-sphinx@1.0.1:", when="+doc", type="build")
def cmake_args(self):
args = [
self.define_from_variant("BUILD_SHARED_LIBS", "shared"),
self.define("DOLFIN_SKIP_BUILD_TESTS", True),
self.define_from_variant("DOLFIN_ENABLE_OPENMP", "openmp"),
self.define_from_variant("DOLFIN_ENABLE_CHOLMOD", "suite-sparse"),
self.define_from_variant("DOLFIN_ENABLE_HDF5", "hdf5"),
self.define_from_variant("HDF5_NO_FIND_PACKAGE_CONFIG_FILE", "hdf5"),
self.define_from_variant("DOLFIN_ENABLE_MPI", "mpi"),
self.define_from_variant("DOLFIN_ENABLE_PARMETIS", "parmetis"),
self.define_from_variant("DOLFIN_ENABLE_PETSC", "petsc"),
self.define_from_variant("DOLFIN_ENABLE_PETSC4PY", "petsc4py"),
self.define_from_variant("DOLFIN_ENABLE_PYTHON", "python"),
self.define_from_variant("DOLFIN_ENABLE_QT", "qt"),
self.define_from_variant("DOLFIN_ENABLE_SCOTCH", "scotch"),
self.define_from_variant("DOLFIN_ENABLE_SLEPC", "slepc"),
self.define_from_variant("DOLFIN_ENABLE_SLEPC4PY", "slepc4py"),
self.define_from_variant("DOLFIN_ENABLE_DOCS", "doc"),
self.define_from_variant("DOLFIN_ENABLE_SPHINX", "doc"),
self.define_from_variant("DOLFIN_ENABLE_TRILINOS", "trilinos"),
self.define_from_variant("DOLFIN_ENABLE_UMFPACK", "suite-sparse"),
self.define_from_variant("DOLFIN_ENABLE_VTK", "vtk"),
self.define_from_variant("DOLFIN_ENABLE_ZLIB", "zlib"),
]
if "+python" in self.spec:
args.append(self.define("PYTHON_EXECUTABLE", self.spec["python"].command.path))
return args
# set environment for bulding python interface
def setup_build_environment(self, env):
env.set("DOLFIN_DIR", self.prefix)
def setup_run_environment(self, env):
env.set("DOLFIN_DIR", self.prefix)
# build python interface of dolfin
@run_after("install")
def install_python_interface(self):
if "+python" in self.spec:
with working_dir("python"):
args = std_pip_args + ["--prefix=" + self.prefix, "."]
pip(*args)
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