blob: a17f9e8f3a5b3cbaeeb8862099e7074efc91c088 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
|
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Fermikit(MakefilePackage):
"""De novo assembly based variant calling pipeline for Illumina short
reads"""
homepage = "https://github.com/lh3/fermikit"
git = "https://github.com/lh3/fermikit.git"
version("2017-11-7", commit="bf9c7112221577ba110665bddca8f1987250bdc7", submodules=True)
depends_on("zlib-api")
depends_on("sse2neon", when="target=aarch64:")
patch("ksw_for_aarch64.patch", when="target=aarch64:")
def install(self, spec, prefix):
install_tree("fermi.kit", prefix.bin)
|
