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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class FindCirc(Package):
"""Find-circ is a collection of python scripts
detecting head-to-tail spliced (back-spliced) sequencing reads,
indicative of circular RNA (circRNA) in RNA-seq data."""
homepage = "https://github.com/marvin-jens/find_circ"
url = "https://github.com/marvin-jens/find_circ/archive/v1.2.tar.gz"
version('1.2', sha256='f88bf9b5d0cc818313074982d4460c96706f555d924e2821832c3d03bf67743e', deprecated=True)
depends_on('python@2.7:2.8', type=('build', 'run'))
depends_on('py-pysam', type=('build', 'run'))
# Higher version of py-pandas and py-numpy
# depends on python@3: which conflicts with py-rnacocktail
depends_on('py-numpy@:1.16.5', type=('build', 'run'))
def install(self, spec, prefix):
mkdir(prefix.bin)
install('cmp_bed.py', prefix.bin)
install('find_circ.py', prefix.bin)
install('maxlength.py', prefix.bin)
install('unmapped2anchors.py', prefix.bin)
install('README.md', prefix)
install('README.pdf', prefix)
install('LICENSE', prefix)
install_tree('test_data', prefix.test_data)
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