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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Gate(CMakePackage):
"""Simulations of Preclinical and Clinical Scans in Emission Tomography,
Transmission Tomography and Radiation Therapy
GATE is an advanced opensource software developed by the international
OpenGATE collaboration and dedicated to numerical simulations in medical
imaging and radiotherapy. It currently supports simulations of Emission
Tomography (Positron Emission Tomography - PET and Single Photon Emission
Computed Tomography - SPECT), Computed Tomography (CT), Optical Imaging
(Bioluminescence and Fluorescence) and Radiotherapy experiments. Using an
easy-to-learn macro mechanism to configurate simple or highly sophisticated
experimental settings, GATE now plays a key role in the design of new
medical imaging devices, in the optimization of acquisition protocols and
in the development and assessment of image reconstruction algorithms and
correction techniques. It can also be used for dose calculation in
radiotherapy experiments."""
homepage = "http://opengatecollaboration.org/"
url = "https://github.com/OpenGATE/Gate/archive/v9.0.tar.gz"
license("LGPL-3.0-or-later")
version("9.1", sha256="aaab874198500b81d45b27cc6d6a51e72cca9519910b893a5c85c8e6d3ffa4fc")
version("9.0", sha256="8354f392facc0b7ae2ddf0eed61cc43136195b198ba399df25e874886b8b69cb")
variant("rtk", default=False, description="build support for the Reconstruction Toolkit")
variant(
"default_platform",
default="condor",
description="select default platform for the cluster tools",
values=("SGE", "condor", "openPBS", "openmosix", "slurm", "xgrid"),
multi=False,
)
depends_on("geant4@:10.6~threads", when="@9.0") # Gate needs a non-threaded geant4
depends_on("geant4@:10.7~threads", when="@9.1") # Gate needs a non-threaded geant4
depends_on("root")
depends_on("itk+rtk", when="+rtk")
patch("cluster_tools_filemerger_Makefile.patch")
patch("cluster_tools_jobsplitter_Makefile.patch")
patch("cluster_tools_jobsplitter_platform.patch")
def cmake_args(self):
args = []
if "+rtk" in self.spec:
args.extend(["-DGATE_USE_ITK=ON", "-DGATE_USE_RTK=ON"])
else:
args.extend(["-DGATE_USE_ITK=OFF", "-DGATE_USE_RTK=OFF"])
return args
def setup_build_environment(self, env):
gc_default_platform = self.spec.variants["default_platform"].value
env.set("GC_DEFAULT_PLATFORM", gc_default_platform)
def setup_run_environment(self, env):
env.set("GC_GATE_EXE_DIR", self.prefix.bin)
env.set(
"GC_CONDOR_SCRIPT", join_path(self.prefix, "share", "jobsplitter", "condor.script")
)
env.set("GC_PBS_SCRIPT", join_path(self.prefix, "share", "jobsplitter", "openPBS.script"))
env.set("GC_SGE_SCRIPT", join_path(self.prefix, "share", "jobsplitter", "SGE.script"))
env.set("GC_SLURM_SCRIPT", join_path(self.prefix, "share", "jobsplitter", "slurm.script"))
@run_after("install")
def cluster_tools(self):
with working_dir("cluster_tools/filemerger"):
make()
make("install", "PREFIX={0}".format(self.prefix))
with working_dir("cluster_tools/jobsplitter"):
make()
make("install", "PREFIX={0}".format(self.prefix))
script_path = join_path(self.prefix, "share", "jobsplitter")
mkdirp(script_path)
install_tree("cluster_tools/jobsplitter/script", script_path)
install("*.xml", self.prefix.share)
install("*.db", self.prefix.share)
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