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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Gemma(MakefilePackage):
"""GEMMA is a software toolkit for fast application of linear mixed models
(LMMs) and related models to genome-wide association studies (GWAS) and
other large-scale data sets."""
homepage = "https://github.com/genetics-statistics/GEMMA"
url = "https://github.com/genetics-statistics/GEMMA/archive/refs/tags/v0.98.5.tar.gz"
maintainers("snehring", "dlkuehn")
license("GPL-3.0-or-later")
version("0.98.5", sha256="3ed336deee29e370f96ec8f1a240f7b62550e57dcd1694245ce7ec8f42241677")
depends_on("zlib-api")
# openblas is the default
# other lapack implementors can be made to work
# but must provide cblas, blas, and lapack libs
depends_on("openblas")
depends_on("gsl@2:")
def install(self, spec, prefix):
mkdirp(prefix.bin)
install("bin/gemma", prefix.bin)
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