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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
import os
import glob
class GenemarkEt(Package):
"""Gene Prediction in Bacteria, archaea, Metagenomes and
Metatranscriptomes."""
homepage = "http://topaz.gatech.edu/GeneMark"
version('4.33', '4ab7d7d3277a685dfb49e11bc5b493c3')
depends_on('perl', type=('build', 'run'))
def url_for_version(self, version):
return "file://{0}/gm_et_linux_64.tar.gz".format(os.getcwd())
def install(self, spec, prefix):
mkdirp(prefix.bin)
with working_dir('gmes_petap'):
install_tree('lib', prefix.lib)
files = glob.iglob('*')
for file in files:
if os.path.isfile(file):
install(file, prefix.bin)
def setup_environment(self, spack_env, run_env):
run_env.prepend_path('PERL5LIB', prefix.lib)
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