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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Generax(CMakePackage):
"""GeneRax is a parallel tool for species tree-aware maximum likelihood
based gene family tree inference under gene duplication, transfer,
and loss.
"""
homepage = "https://github.com/BenoitMorel/GeneRax"
git = "https://github.com/BenoitMorel/GeneRax.git"
maintainers("snehring")
license("AGPL-3.0-or-later")
version("master", branch="master", submodules=True)
version("dev", branch="dev", submodules=True)
version("2.0.4", commit="e4fab40f407bdd3b588d3d69a449f8c1be56f9fa", submodules=True)
version("2.0.1", commit="0623dae55dd602a60faae63e9991fa8d41782456", submodules=True)
depends_on("cmake@3.0.1:", type="build")
depends_on("mpi", when="+mpi")
depends_on("bison")
depends_on("flex")
variant("mpi", default=False, description="Build with MPI support")
build_directory = "build"
patch("model-stdexcept.patch", when="@:2.0.4")
def install(self, spec, prefix):
install_tree("build/bin", prefix.bin)
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