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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Gptune(CMakePackage):
"""GPTune is an autotuning framework that relies on multitask and transfer
learnings to help solve the underlying black-box optimization problem using
Bayesian optimization methodologies."""
homepage = "https://gptune.lbl.gov/"
url = "https://github.com/gptune/GPTune/archive/refs/tags/3.0.0.tar.gz"
git = "https://github.com/gptune/GPTune.git"
maintainers("liuyangzhuan")
license("BSD-3-Clause-LBNL")
version("master", branch="master")
version("4.0.0", sha256="4f954a810d83b73f5abe5b15b79e3ed5b7ebf7bc0ae7335d27b68111bd078102")
version("3.0.0", sha256="e19bfc3033fff11ff8c20cae65b88b7ca005d2c4e4db047f9f23226126ec92fa")
version("2.1.0", sha256="737e0a1d83f66531098beafa73dd479f12def576be83b1c7b8ea5f1615d60a53")
variant("superlu", default=False, description="Build the SuperLU_DIST example")
variant("hypre", default=False, description="Build the Hypre example")
variant("mpispawn", default=True, description="MPI spawning-based interface")
depends_on("mpi", type=("build", "link", "run"))
depends_on("cmake@3.17:", type="build")
depends_on("jq", type="run")
depends_on("blas", type="link")
depends_on("lapack", type="link")
depends_on("scalapack", type="link")
depends_on("py-setuptools", type="build")
depends_on("py-ipyparallel", type=("build", "run"))
depends_on("py-numpy@:1.24", type=("build", "run"), when="@:4.0.0")
depends_on("py-numpy@:1.21.5", type=("build", "run"), when="@:2.1.0")
depends_on("py-pandas", type=("build", "run"))
depends_on("py-joblib", type=("build", "run"))
depends_on("py-scikit-learn", type=("build", "run"))
depends_on("py-matplotlib", type=("build", "run"))
depends_on("py-pyyaml", type=("build", "run"))
depends_on("py-scikit-optimize@0.9.0", patches=[patch("space.patch")], type=("build", "run"))
depends_on("py-gpy", type=("build", "run"))
depends_on("py-lhsmdu", type=("build", "run"))
depends_on("py-hpbandster", type=("build", "run"))
depends_on("py-opentuner", type=("build", "run"))
depends_on("py-ytopt-autotune@1.1.0", type=("build", "run"))
depends_on("py-filelock", type=("build", "run"))
depends_on("py-requests", type=("build", "run"))
depends_on("py-pyaml", type=("build", "run"))
depends_on("py-statsmodels@0.13.0:", type=("build", "run"))
depends_on("py-mpi4py@3.0.3:", type=("build", "run"))
depends_on("python", type=("build", "run"))
depends_on("pygmo", type=("build", "run"))
depends_on("openturns", type=("build", "run"))
depends_on("py-pymoo", type=("build", "run"), when="@3.0.0:")
depends_on("superlu-dist@develop", when="+superlu", type=("build", "run"))
depends_on("hypre+gptune@2.19.0", when="+hypre", type=("build", "run"))
depends_on("openmpi@4:", when="+mpispawn", type=("build", "run"))
conflicts("^mpich", when="+mpispawn")
conflicts("^spectrum-mpi", when="+mpispawn")
conflicts("^cray-mpich", when="+mpispawn")
conflicts("%gcc@:7")
def cmake_args(self):
spec = self.spec
fc_flags = []
if "%gcc@10:" in spec or self.spec.satisfies("%apple-clang@11:"):
fc_flags.append("-fallow-argument-mismatch")
args = [
"-DGPTUNE_INSTALL_PATH=%s" % python_platlib,
"-DTPL_BLAS_LIBRARIES=%s" % spec["blas"].libs.joined(";"),
"-DTPL_LAPACK_LIBRARIES=%s" % spec["lapack"].libs.joined(";"),
"-DTPL_SCALAPACK_LIBRARIES=%s" % spec["scalapack"].libs.joined(";"),
"-DCMAKE_Fortran_FLAGS=" + "".join(fc_flags),
"-DBUILD_SHARED_LIBS=ON",
"-DCMAKE_CXX_COMPILER=%s" % spec["mpi"].mpicxx,
"-DCMAKE_C_COMPILER=%s" % spec["mpi"].mpicc,
"-DCMAKE_Fortran_COMPILER=%s" % spec["mpi"].mpifc,
]
return args
examples_src_dir = "examples"
src_dir = "GPTune"
nodes = 1
cores = 4
@run_after("install")
def cache_test_sources(self):
"""Copy the example source files after the package is installed to an
install test subdirectory for use during `spack test run`."""
self.cache_extra_test_sources([self.examples_src_dir])
def setup_run_environment(self, env):
env.set("GPTUNE_INSTALL_PATH", python_platlib)
def test(self):
spec = self.spec
comp_name = self.compiler.name
comp_version = str(self.compiler.version).replace(".", ",")
test_dir = join_path(self.test_suite.current_test_cache_dir, self.examples_src_dir)
if "+superlu" in spec:
superludriver = join_path(spec["superlu-dist"].prefix.lib, "EXAMPLE/pddrive_spawn")
op = ["-r", superludriver, "."]
# copy superlu-dist executables to the correct place
wd = join_path(test_dir, "SuperLU_DIST")
self.run_test("rm", options=["-rf", "superlu_dist"], work_dir=wd)
self.run_test(
"git",
options=["clone", "https://github.com/xiaoyeli/superlu_dist.git"],
work_dir=wd,
)
self.run_test("mkdir", options=["-p", "build"], work_dir=wd + "/superlu_dist")
self.run_test("mkdir", options=["-p", "EXAMPLE"], work_dir=wd + "/superlu_dist/build")
self.run_test("cp", options=op, work_dir=wd + "/superlu_dist/build/EXAMPLE")
if "+hypre" in spec:
hypredriver = join_path(spec["hypre"].prefix.bin, "ij")
op = ["-r", hypredriver, "."]
# copy superlu-dist executables to the correct place
wd = join_path(test_dir, "Hypre")
self.run_test("rm", options=["-rf", "hypre"], work_dir=wd)
self.run_test(
"git", options=["clone", "https://github.com/hypre-space/hypre.git"], work_dir=wd
)
self.run_test("cp", options=op, work_dir=wd + "/hypre/src/test/")
wd = self.test_suite.current_test_cache_dir
with open("{0}/run_env.sh".format(wd), "w") as envfile:
envfile.write('if [[ $NERSC_HOST = "cori" ]]; then\n')
envfile.write(" export machine=cori\n")
envfile.write('elif [[ $(uname -s) = "Darwin" ]]; then\n')
envfile.write(" export machine=mac\n")
envfile.write("elif [[ $(dnsdomainname) = " + '"summit.olcf.ornl.gov" ]]; then\n')
envfile.write(" export machine=summit\n")
envfile.write(
'elif [[ $(cat /etc/os-release | grep "PRETTY_NAME") =='
+ ' *"Ubuntu"* || $(cat /etc/os-release | grep'
+ ' "PRETTY_NAME") == *"Debian"* ]]; then\n'
)
envfile.write(" export machine=unknownlinux\n")
envfile.write("fi\n")
envfile.write("export GPTUNEROOT=$PWD\n")
envfile.write("export MPIRUN={0}\n".format(which(spec["mpi"].prefix.bin + "/mpirun")))
envfile.write("export PYTHONPATH={0}:$PYTHONPATH\n".format(python_platlib + "/gptune"))
envfile.write("export proc=$(spack arch)\n")
envfile.write("export mpi={0}\n".format(spec["mpi"].name))
envfile.write("export compiler={0}\n".format(comp_name))
envfile.write("export nodes={0} \n".format(self.nodes))
envfile.write("export cores={0} \n".format(self.cores))
envfile.write("export ModuleEnv=$machine-$proc-$mpi-$compiler \n")
envfile.write(
'software_json=$(echo ",\\"software_configuration\\":'
+ '{\\"'
+ spec["blas"].name
+ '\\":{\\"version_split\\":'
+ " ["
+ str(spec["blas"].versions).replace(".", ",")
+ ']},\\"'
+ spec["mpi"].name
+ '\\":{\\"version_split\\": ['
+ str(spec["mpi"].versions).replace(".", ",")
+ ']},\\"'
+ spec["scalapack"].name
+ '\\":{\\"version_split\\": ['
+ str(spec["scalapack"].versions).replace(".", ",")
+ ']},\\"'
+ str(comp_name)
+ '\\":{\\"version_split\\": ['
+ str(comp_version)
+ ']}}") \n'
)
envfile.write(
'loadable_software_json=$(echo ",\\"loadable_software_'
+ 'configurations\\":{\\"'
+ spec["blas"].name
+ '\\":{\\"version_split\\": ['
+ str(spec["blas"].versions).replace(".", ",")
+ ']},\\"'
+ spec["mpi"].name
+ '\\":{\\"version_split\\": ['
+ str(spec["mpi"].versions).replace(".", ",")
+ ']},\\"'
+ spec["scalapack"].name
+ '\\":{\\"version_split\\": ['
+ str(spec["scalapack"].versions).replace(".", ",")
+ ']},\\"'
+ str(comp_name)
+ '\\":{\\"version_split\\": ['
+ str(comp_version)
+ ']}}") \n'
)
envfile.write(
'machine_json=$(echo ",\\"machine_configuration\\":'
+ '{\\"machine_name\\":\\"$machine\\",\\"$proc\\":'
+ '{\\"nodes\\":$nodes,\\"cores\\":$cores}}") \n'
)
envfile.write(
'loadable_machine_json=$(echo ",\\"loadable_machine_'
+ 'configurations\\":{\\"$machine\\":{\\"$proc\\":'
+ '{\\"nodes\\":$nodes,\\"cores\\":$cores}}}") \n'
)
# copy the environment configuration files to non-cache directories
op = ["run_env.sh", python_platlib + "/gptune/."]
self.run_test("cp", options=op, work_dir=wd)
op = ["run_env.sh", self.install_test_root + "/."]
self.run_test("cp", options=op, work_dir=wd)
apps = ["Scalapack-PDGEQRF_RCI"]
if "+mpispawn" in spec:
apps = apps + ["GPTune-Demo", "Scalapack-PDGEQRF"]
if "+superlu" in spec:
apps = apps + ["SuperLU_DIST_RCI"]
if "+mpispawn" in spec:
apps = apps + ["SuperLU_DIST"]
if "+hypre" in spec:
if "+mpispawn" in spec:
apps = apps + ["Hypre"]
for app in apps:
wd = join_path(test_dir, app)
self.run_test(
"bash",
options=["run_examples.sh"],
work_dir=wd,
purpose="gptune smoke test for {0}".format(app),
)
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