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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Gptune(CMakePackage):
"""GPTune is an autotuning framework that relies on multitask and transfer
learnings to help solve the underlying black-box optimization problem using
Bayesian optimization methodologies."""
homepage = "https://gptune.lbl.gov/"
git = "https://github.com/gptune/GPTune.git"
maintainers = ['liuyangzhuan']
version('master', branch='master')
variant('app', default=False, description='Build all HPC application examples')
depends_on('mpi', type=('build', 'link', 'run'))
depends_on('cmake@3.3:', type='build')
depends_on('jq', type='run')
depends_on('blas', type='link')
depends_on('lapack', type='link')
depends_on('scalapack', type='link')
depends_on('py-setuptools', type='build')
depends_on('py-ipyparallel', type=('build', 'run'))
depends_on('py-numpy', type=('build', 'run'))
depends_on('py-pandas', type=('build', 'run'))
depends_on('py-joblib', type=('build', 'run'))
depends_on('py-scikit-learn', type=('build', 'run'))
depends_on('py-matplotlib', type=('build', 'run'))
depends_on('py-pyyaml', type=('build', 'run'))
depends_on('py-scikit-optimize@master+gptune', type=('build', 'run'))
depends_on('py-gpy', type=('build', 'run'))
depends_on('py-lhsmdu', type=('build', 'run'))
depends_on('py-hpbandster', type=('build', 'run'))
depends_on('py-opentuner', type=('build', 'run'))
depends_on('py-ytopt-autotune@1.1.0', type=('build', 'run'))
depends_on('py-filelock', type=('build', 'run'))
depends_on('py-requests', type=('build', 'run'))
depends_on('py-cython', type=('build', 'run'))
depends_on('py-pyaml', type=('build', 'run'))
depends_on('py-mpi4py@3.0.3:', type=('build', 'run'))
depends_on('pygmo', type=('build', 'run'))
depends_on('openturns', type=('build', 'run'))
depends_on('superlu-dist@develop', when='+app', type=('build', 'run'))
conflicts('openmpi@:3')
def cmake_args(self):
spec = self.spec
fc_flags = []
if '%gcc@10:' in spec or self.spec.satisfies('%apple-clang@11:'):
fc_flags.append('-fallow-argument-mismatch')
args = [
'-DTPL_BLAS_LIBRARIES=%s' % spec['blas'].libs.joined(";"),
'-DTPL_LAPACK_LIBRARIES=%s' % spec['lapack'].libs.joined(";"),
'-DTPL_SCALAPACK_LIBRARIES=%s' % spec['scalapack'].
libs.joined(";"),
'-DCMAKE_Fortran_FLAGS=' + ''.join(fc_flags),
'-DBUILD_SHARED_LIBS=ON',
]
return args
examples_src_dir = 'examples'
src_dir = 'GPTune'
nodes = 1
cores = 4
@run_after('install')
def cache_test_sources(self):
"""Copy the example source files after the package is installed to an
install test subdirectory for use during `spack test run`."""
self.cache_extra_test_sources([self.examples_src_dir, self.src_dir])
def test(self):
spec = self.spec
comp_name = self.compiler.name
comp_version = str(self.compiler.version).replace('.', ',')
test_dir = join_path(self.install_test_root, self.examples_src_dir)
if '+app' in spec:
superludriver = join_path(spec['superlu-dist'].prefix.bin, 'pddrive_spawn')
op = ['-r', superludriver, '.']
# copy superlu-dist executables to the correct place
with working_dir(join_path(test_dir, 'SuperLU_DIST'), create=False):
self.run_test('rm', options=['-rf', 'superlu_dist'], work_dir='.')
self.run_test('git', options=['clone', 'https://github.com/xiaoyeli/superlu_dist.git'], work_dir='.')
self.run_test('mkdir', options=['-p',
'build'], work_dir='./superlu_dist')
self.run_test('mkdir', options=['-p', 'EXAMPLE'],
work_dir='./superlu_dist/build')
self.run_test('cp', options=op, work_dir='./superlu_dist/build/EXAMPLE')
with working_dir(self.install_test_root, create=False):
cdir = join_path(self.prefix, 'gptuneclcm')
self.run_test('cp', options=['-r', cdir, '.'], work_dir='.')
self.run_test('rm', options=['-rf', 'build'], work_dir='.')
self.run_test('mv', options=['gptuneclcm', 'build'], work_dir='.')
with open('{0}/run_env.sh'.format(self.install_test_root), 'w') as envfile:
envfile.write('if [[ $NERSC_HOST = "cori" ]]; then\n')
envfile.write(' export machine=cori\n')
envfile.write('elif [[ $(uname -s) = "Darwin" ]]; then\n')
envfile.write(' export machine=mac\n')
envfile.write('elif [[ $(dnsdomainname) = ' +
'"summit.olcf.ornl.gov" ]]; then\n')
envfile.write(' export machine=summit\n')
envfile.write('elif [[ $(cat /etc/os-release | grep "PRETTY_NAME") ==' +
' *"Ubuntu"* || $(cat /etc/os-release | grep' +
' "PRETTY_NAME") == *"Debian"* ]]; then\n')
envfile.write(' export machine=unknownlinux\n')
envfile.write('fi\n')
envfile.write('export GPTUNEROOT=$PWD\n')
envfile.write('export MPIRUN={0}\n'.format
(which(spec['mpi'].prefix.bin + '/mpirun')))
envfile.write('export proc=$(spack arch)\n')
envfile.write('export mpi={0}\n'.format(spec['mpi'].name))
envfile.write('export compiler={0}\n'.format(comp_name))
envfile.write('export nodes={0} \n'.format(self.nodes))
envfile.write('export cores={0} \n'.format(self.cores))
envfile.write('export ModuleEnv=$machine-$proc-$mpi-$compiler \n')
envfile.write('software_json=$(echo ",\\\"software_configuration\\\":' +
'{\\\"' + spec['blas'].name +
'\\\":{\\\"version_split\\\":' +
' [' + str(spec['blas'].versions).replace('.', ',') +
']},\\\"' + spec['mpi'].name +
'\\\":{\\\"version_split\\\": [' +
str(spec['mpi'].versions).replace('.', ',') + ']},\\\"' +
spec['scalapack'].name +
'\\\":{\\\"version_split\\\": [' +
str(spec['scalapack'].versions).replace('.', ',') +
']},\\\"' +
str(comp_name) + '\\\":{\\\"version_split\\\": [' +
str(comp_version) + ']}}") \n')
envfile.write('loadable_software_json=$(echo ",\\\"loadable_software_' +
'configurations\\\":{\\\"' + spec['blas'].name +
'\\\":{\\\"version_split\\\": [' +
str(spec['blas'].versions).replace('.', ',') +
']},\\\"' + spec['mpi'].name +
'\\\":{\\\"version_split\\\": [' +
str(spec['mpi'].versions).replace('.', ',') + ']},\\\"' +
spec['scalapack'].name +
'\\\":{\\\"version_split\\\": [' +
str(spec['scalapack'].versions).replace('.', ',') +
']},\\\"' + str(comp_name) +
'\\\":{\\\"version_split\\\": ['
+ str(comp_version) + ']}}") \n')
envfile.write('machine_json=$(echo ",\\\"machine_configuration\\\":' +
'{\\\"machine_name\\\":\\\"$machine\\\",\\\"$proc\\\":' +
'{\\\"nodes\\\":$nodes,\\\"cores\\\":$cores}}") \n')
envfile.write('loadable_machine_json=$(echo ",\\\"loadable_machine_' +
'configurations\\\":{\\\"$machine\\\":{\\\"$proc\\\":' +
'{\\\"nodes\\\":$nodes,\\\"cores\\\":$cores}}}") \n')
if '+app' in spec:
apps = ['GPTune-Demo', 'SuperLU_DIST', 'SuperLU_DIST_RCI',
'Scalapack-PDGEQRF', 'Scalapack-PDGEQRF_RCI']
else:
apps = ['GPTune-Demo', 'Scalapack-PDGEQRF', 'Scalapack-PDGEQRF_RCI']
for app in apps:
with working_dir(join_path(test_dir, app), create=False):
# PDGEQRF with GPTune
self.run_test('bash', options=['run_examples.sh'], work_dir='.',
purpose='gptune smoke test for {0}'.format(app))
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