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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Halc(MakefilePackage):
"""HALC is software that makes error correction for long reads with
high throughput."""
homepage = "https://github.com/lanl001/halc"
url = "https://github.com/lanl001/halc/archive/v1.1.tar.gz"
version('1.1', '4b289b366f6a5400ca481993aa68dd9c')
depends_on('blasr', type='run')
depends_on('lordec', type='run')
depends_on('dos2unix', type='build')
depends_on('python', type='run')
parallel = False
def install(self, spec, prefix):
install_tree('bin', prefix.bin)
install('runHALC.py', prefix.bin)
dos2unix = which('dos2unix')
dos2unix(join_path(self.prefix.bin, 'runHALC.py'))
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